CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.51742.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.51742.1.S1_at CV243886 hypothetical protein - 7e-45 At3g02090 mitochondrial processing peptidase beta subunit, putative S.X. H.G.
0.67 91.1 Ptp.2456.2.S1_a_at CV269924 hypothetical protein - 2e-12 At5g67590 FRO1 (FROSTBITE1) S.X. H.G.
0.55 82.2 PtpAffx.249.93.S1_x_at BP934988 hypothetical protein - 0 At5g13490 AAC2 (ADP/ATP carrier 2) S.X. H.G.
0.50 78.6 PtpAffx.11859.5.A1_a_at CV249708 hypothetical protein - 2e-11 At4g26210 mitochondrial ATP synthase g subunit family protein S.X. H.G.
0.40 67.0 Ptp.6514.1.S1_s_at CV273030 hypothetical protein - 7e-34 At3g15640 cytochrome c oxidase family protein S.X. H.G.
0.29 50.5 Ptp.6193.1.S1_at CV249273 hypothetical protein - 1e-19 At3g03070 NADH-ubiquinone oxidoreductase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 99.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.9 98.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 0 1035 Ptp.2312.1.A1_at CA928446 hypothetical protein - 7e-62 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.34 2e-157 557 PtpAffx.51742.2.A1_at CV234220 hypothetical protein - 3e-20 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.02 9e-2 40 PtpAffx.73954.1.S1_at BU837058 - - 6e-2 At1g66045 unknown protein C.G. S.X.
0.01 4e-1 38 PtpAffx.40803.1.S1_at BU892520 hypothetical protein - 3e-2 At4g01650 - C.G. S.X.
0.01 1e+0 36 PtpAffx.220057.1.S1_x_at pmrna36333 - - 3e-2 At1g27710 glycine-rich protein C.G. S.X.
0.01 1e+0 36 PtpAffx.203417.1.S1_at pmrna6802 white-brown-complex ABC transporter family - 2e-92 At5g60740 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.01 1e+0 36 Ptp.6953.1.S1_at DN498434 - - 3e-1 Atcg00150 - C.G. S.X.
0.01 1e+0 36 Ptp.4444.1.S1_at CV254838 hypothetical protein - 2e-16 At3g25920 RPL15 C.G. S.X.
0.01 6e+0 34 PtpAffx.88797.1.A1_at CV252376 - - 5e+0 Atmg00820 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 7e-45 182 Arabidopsis thaliana At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV - - - C.G. S.X.
0.34 2e-92 341 Glycine max Gma.4910.1.S1_at BE822863 - - 5e-41 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.13 3e-30 133 Hordeum vulgare Contig2823_at Contig2823 - - 6e-36 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.14 7e-22 107 Oryza sativa Os03g0212700 AK120113.1 - Cytochrome C reductase-processing peptidasesubunit I, MPP subunit I, P55 6e-18 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.18 4e-22 107 Triticum aestivum Ta.26547.1.A1_at CD491184 - - 2e-31 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.50 8e-156 549 Vitis vinifera 1612412_at CB005149 hypothetical protein LOC100259477 - 5e-104 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.19 5e-16 85 Zea mays Zm.5860.1.A1_at CK826714 Hypothetical protein LOC100191520 - 2e-14 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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