CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.50667.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.50667.1.A1_at CV237201 - - 1e+1 At5g62200 embryo-specific protein-related S.X. H.G.
0.33 57.5 PtpAffx.210347.1.S1_at pmrna20341 hypothetical protein - 1e-8 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative S.X. H.G.
0.31 53.7 PtpAffx.221618.1.S1_at pmrna38591 hypothetical protein - 8e-1 At5g35900 LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35) S.X. H.G.
0.29 50.5 PtpAffx.224111.1.S1_at pmrna42350 hypothetical protein - 2e+0 At5g38050 unknown protein S.X. H.G.
0.25 43.6 Ptp.5397.1.A1_at CV250958 hypothetical protein - 1e+0 At5g15320 unknown protein S.X. H.G.
0.19 32.7 Ptp.3432.1.S1_at DN503100 - - 1e+0 At1g44575 NPQ4 (NONPHOTOCHEMICAL QUENCHING) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.9 99.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
11.4 99.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.2 98.8 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
9.2 98.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 PtpAffx.215983.1.S1_at pmrna30479 2-cys prx, alkyl hydroperoxide reductase-like protein - 4e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) C.G. S.X.
0.01 1e+0 34 PtpAffx.223323.1.S1_at pmrna41259 hypothetical protein - 5e-3 At4g19380 alcohol oxidase-related C.G. S.X.
0.02 1e+0 34 PtpAffx.220198.1.S1_at pmrna36555 - - 3e+0 At1g12064 unknown protein C.G. S.X.
0.01 5e+0 32 PtpAffx.4597.1.A1_a_at CV282968 hypothetical protein - 1e-2 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.01 5e+0 32 PtpAffx.4597.1.A2_s_at CX167881 hypothetical protein - 1e-2 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.08 5e+0 32 PtpAffx.219356.1.S1_at pmrna35254 prokaryotic glutaredoxin-related protein - 3e+0 At5g58330 malate dehydrogenase (NADP), chloroplast, putative C.G. S.X.
0.01 5e+0 32 PtpAffx.219236.1.S1_at pmrna35093 hypothetical protein - 5e+0 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
0.02 5e+0 32 PtpAffx.215002.1.S1_at pmrna28942 - - 3e+0 At1g08810 MYB60 (myb domain protein 60) C.G. S.X.
0.01 5e+0 32 PtpAffx.213797.1.S1_at pmrna26930 hypothetical protein - 4e-4 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana At5g62200 836341 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P - - - C.G. S.X.
0.04 1e+0 34 Glycine max PsAffx.CL1111Contig1_s_at PsAffx.CL1111Contig1 - - 1e+1 At5g08141 AtbZIP75 (Arabidopsis thaliana basic leucine-zipper 75) C.G. S.X.
0.03 4e-1 34 Hordeum vulgare HVSMEg0017O10r2_s_at HVSMEg0017O10r2 - - 4e+0 At4g13955 - C.G. S.X.
0.05 4e-1 36 Oryza sativa Os07g0516100 9635.m03271 - Protein phosphatase 2C-like domain containingprotein 3e-1 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
0.05 6e-2 38 Triticum aestivum Ta.27568.1.A1_at CA707013 Starch synthase III - 3e+0 At1g13830 beta-1,3-glucanase-related C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1614437_at CF406008 - - 5e-1 At3g25882 NIMIN-2 (NIM1-INTERACTING 2) C.G. S.X.
0.05 4e-1 34 Zea mays Zm.9556.1.A1_at BM382552 - - 4e-1 At5g63480 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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