CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.50507.1.A1_s_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 74.6 PtpAffx.50507.1.A1_s_at CV247777 - - 2e-18 At5g55290 ATP synthase subunit H family protein S.X. H.G.
0.55 82.2 PtpAffx.9076.1.A1_at CV252324 hypothetical protein - 1e-30 At2g43070 protease-associated (PA) domain-containing protein S.X. H.G.
0.36 61.6 PtpAffx.98987.1.S1_s_at DN500449 hypothetical protein - 1e+0 At5g16453 - S.X. H.G.
0.33 57.5 Ptp.4967.1.A1_at CV228163 hypothetical protein - 2e-20 At5g51430 EYE (EMBRYO YELLOW) S.X. H.G.
0.14 23.5 PtpAffx.12848.1.S1_at DN484571 hypothetical protein - 3e-11 At2g37410 ATTIM17-2 S.X. H.G.
0.13 21.6 Ptp.273.1.S1_at CK087938 hypothetical protein - 2e-24 At3g42050 vacuolar ATP synthase subunit H family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.2 93.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 7e-105 381 Ptp.6175.2.S1_at CV246158 hypothetical protein - 3e-17 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.47 4e-103 375 Ptp.6175.1.S1_a_at CV249693 hypothetical protein - 4e-19 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.3867.1.A1_at CV280837 hypothetical protein - 4e-15 At3g12120 FAD2 (FATTY ACID DESATURASE 2) C.G. S.X.
0.02 1e-1 38 PtpAffx.3867.1.A1_x_at CV280837 hypothetical protein - 4e-15 At3g12120 FAD2 (FATTY ACID DESATURASE 2) C.G. S.X.
0.03 5e-1 36 PtpAffx.201580.1.S1_at pmrna3101 hypothetical protein - 1e+0 At2g14920 ST4A (SULFOTRANSFERASE 4A) C.G. S.X.
0.03 2e+0 34 PtpAffx.98398.1.A1_s_at AJ778498 hypothetical protein - 6e-24 At1g54290 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.01 2e+0 34 PtpAffx.220201.1.S1_at pmrna36558 hypothetical protein - 1e+0 At1g69230 SP1L2 (SPIRAL1-LIKE2) C.G. S.X.
0.01 2e+0 34 PtpAffx.206048.1.S1_at pmrna11985 hypothetical protein - 6e-68 At3g56690 CIP111 (CAM INTERACTING PROTEIN 111) C.G. S.X.
0.03 2e+0 34 PtpAffx.16258.1.S1_at DN493080 hypothetical protein - 7e-6 At4g37670 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-18 93 Arabidopsis thaliana At5g55290 835622 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF - - - C.G. S.X.
0.23 6e-13 75 Glycine max Gma.7079.1.S1_s_at BU577711 - - 2e-5 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.06 7e-4 44 Hordeum vulgare Contig6470_at Contig6470 - - 1e-3 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.08 2e-4 48 Oryza sativa Os04g0660600 AK120899.1 - ATP synthase subunit H family protein 3e-10 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.04 9e-2 38 Triticum aestivum Ta.5109.3.S1_at CA697843 Plasma membrane H+-ATPase subunit H - 9e-6 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.19 3e-20 97 Vitis vinifera 1611174_at CD801315 hypothetical protein LOC100255548 - 3e-10 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.820.3.S1_at AI691700 Hypothetical protein LOC100216625 - 8e-1 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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