Gene omics information

Query gene ID	PtpAffx.50263.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	91.5	PtpAffx.50263.1.A1_at	CV252613	-	-	4e+0	At4g10920	KELP	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.209962.1.S1_at	pmrna19647	hypothetical protein	-	5e-1	At4g30590	plastocyanin-like domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.1628.1.S1_at	CK092783	-	-	1e-45	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.208240.1.S1_at	pmrna16403	hypothetical protein	-	3e-2	At3g57810	OTU-like cysteine protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.1205.1.S1_at	CK090114	-	-	4e-1	At1g53330	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.2690.2.S1_at	BP930140	-	-	3e-12	At4g13640	UNE16 (unfertilized embryo sac 16)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.90328.1.S1_at	DN491760	hypothetical protein	-	2e-1	At1g55780	metal ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.95031.1.A1_at	BP936487	hypothetical protein	-	2e-10	At1g11880	transferase, transferring hexosyl groups	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.7866.2.S1_a_at	DN490485	-	-	4e+0	At3g20450	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.7871.1.S1_at	CV261392	hypothetical protein	-	1e-35	At5g36170	HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.9	97.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.1	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	PtpAffx.94773.1.A1_at	CV254308	hypothetical protein	-	1e-4	At5g26670	pectinacetylesterase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.57260.1.S1_at	CV232927	-	-	7e-13	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.225757.1.S1_at	pmrna45334	cc-nbs-lrr resistance protein	-	2e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	36	PtpAffx.225481.1.S1_at	pmrna44852	nbs-lrr resistance protein	-	1e+0	At5g63690	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	36	PtpAffx.225481.1.S1_x_at	pmrna44852	nbs-lrr resistance protein	-	1e+0	At5g63690	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.217806.1.S1_s_at	pmrna33214	cc-nbs-lrr resistance protein /// hypothetical protein /// nbs-lrr resistance protein	-	1e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.220238.1.S1_at	pmrna36600	cc-nbs-lrr resistance protein	-	2e-2	At1g47056	VFB1 (VIER F-BOX PROTEINE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.220054.1.S1_at	pmrna36330	hypothetical protein	-	4e-1	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203149.1.S1_at	pmrna6238	hypothetical protein	-	1e-142	At5g51300	splicing factor-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g10920	826690	KELP	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	HgAffx.22067.1.S1_at	BI451491	-	-	3e+0	At1g20816	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig18488_at	Contig18488	-	-	5e+0	At5g37910	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	OsAffx.8523.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	TaAffx.108156.1.S1_at	CA691147	-	-	1e+0	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.9158.1.A1_at	AY109241.1	glucose-1-phosphate adenylyltransferase large subunit 3 precursor-like	-	8e-2	At2g21590	APL4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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