CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.5021.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.5021.1.S1_at CK090757 hypothetical protein - 1e-4 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) S.X. H.G.
0.44 71.9 PtpAffx.18825.6.A1_at CV255492 hypothetical protein - 3e-23 At5g12190 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.29 50.5 PtpAffx.9962.1.S1_a_at CV244590 hypothetical protein - 3e+0 At4g18580 unknown protein S.X. H.G.
0.22 38.3 Ptp.1492.1.S1_s_at CV271929 hypothetical protein - 4e-33 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) S.X. H.G.
0.18 30.8 PtpAffx.219972.1.S1_at pmrna36173 hypothetical protein - 1e-38 At5g47490 unknown protein S.X. H.G.
0.15 25.3 PtpAffx.141227.1.A1_s_at CV272556 hypothetical protein - 6e-19 At5g48520 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-23 111 PtpAffx.92136.1.S1_s_at BU837936 hypothetical protein - 3e-8 At1g04950 TAF6 (TBP-ASSOCIATED FACTOR 6) C.G. S.X.
0.18 2e-23 111 PtpAffx.92136.1.S1_at BU837936 hypothetical protein - 3e-8 At1g04950 TAF6 (TBP-ASSOCIATED FACTOR 6) C.G. S.X.
0.12 6e-23 109 PtpAffx.201261.1.S1_at pmrna2498 hypothetical protein - 7e-14 At1g04950 TAF6 (TBP-ASSOCIATED FACTOR 6) C.G. S.X.
0.03 7e-1 36 PtpAffx.3058.2.A1_at BP936796 hypothetical protein - 2e-14 At5g14310 AtCXE16 (Arabidopsis thaliana carboxyesterase 16) C.G. S.X.
0.02 7e-1 36 PtpAffx.11610.1.S1_at CV259218 - - 7e-18 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) C.G. S.X.
0.02 3e+0 34 PtpAffx.61529.1.A1_at BP930207 hypothetical protein - 4e+0 At5g24420 glucosamine/galactosamine-6-phosphate isomerase-related C.G. S.X.
0.01 3e+0 34 PtpAffx.507.1.S1_at CV248516 hypothetical protein - 2e-4 At2g41900 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.5041.1.A1_at CV264087 - - 4e-1 At2g03500 myb family transcription factor C.G. S.X.
0.01 3e+0 34 PtpAffx.224179.1.S1_at pmrna42474 hypothetical protein - 1e-1 At4g35370 nucleotide binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-4 48 Arabidopsis thaliana At1g54360 841877 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. - - - C.G. S.X.
0.13 1e-8 61 Glycine max GmaAffx.50657.1.S1_at BM521609 - - 8e-2 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig26104_at Contig26104 - - 1e+0 At3g52940 FK (FACKEL) C.G. S.X.
0.04 6e-2 40 Oryza sativa Os01g0762500 BI803155 - - 5e+0 At4g30750 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.65420.1.S1_at BJ247128 - - 4e+0 At2g23540 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1612077_at CA817126 - - 4e-1 At4g25150 acid phosphatase, putative C.G. S.X.
0.05 2e-7 56 Zea mays Zm.6261.1.A1_at AY105522.1 hypothetical protein LOC100217288 - 4e-8 At1g04950 TAF6 (TBP-ASSOCIATED FACTOR 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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