CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.50176.2.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
0.91 99.2 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein S.X. H.G.
0.73 93.6 PtpAffx.152322.1.A1_at DN487182 - - 4e-35 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
0.60 86.0 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.55 82.2 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH S.X. H.G.
0.50 78.6 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3 95.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 7e-28 125 PtpAffx.152322.1.A1_at DN487182 - - 4e-35 At2g26830 emb1187 (embryo defective 1187) C.G. S.X.
0.03 2e-3 44 PtpAffx.88048.2.S1_a_at CV256013 - - 1e-1 At3g52620 unknown protein C.G. S.X.
0.03 2e-3 44 PtpAffx.37965.1.A1_a_at CV240875 hypothetical protein - 5e+0 At1g75250 ATRL6 (ARABIDOPSIS RAD-LIKE 6) C.G. S.X.
0.03 2e-3 44 PtpAffx.1398.14.S1_at CV239988 hypothetical protein - 1e-16 At3g54840 ARA6 C.G. S.X.
0.02 8e-3 42 PtpAffx.153772.1.S1_at CX169838 hypothetical protein - 1e-88 At2g21470 SAE2 (SUMO-ACTIVATING ENZYME 2) C.G. S.X.
0.03 8e-3 42 PtpAffx.147036.1.A1_at CV253958 - - 3e-1 At3g20610 non-race specific disease resistance protein, putative C.G. S.X.
0.03 8e-3 42 PtpAffx.133899.1.A1_at CV257452 hypothetical protein - 1e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.03 8e-3 42 Ptp.5645.2.A1_at CV253732 hypothetical protein - 3e-26 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) C.G. S.X.
0.03 8e-3 42 Ptp.5740.1.S1_a_at CV241383 hypothetical protein - 4e-7 At5g49710 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-16 87 Arabidopsis thaliana At2g26830 817224 emb1187 (embryo defective 1187) F:phosphotransferase activity, alcohol group as acceptor, kinase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOBFP - - - C.G. S.X.
0.22 2e-21 103 Glycine max GmaAffx.66139.1.S1_at BM143113 - - 4e-4 At2g26830 emb1187 (embryo defective 1187) C.G. S.X.
0.07 1e-14 79 Hordeum vulgare Contig9547_at Contig9547 - - 8e-1 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) C.G. S.X.
0.04 7e-1 36 Oryza sativa Os05g0317800 9633.m02282 - - 2e-2 At3g30775 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.3233.2.A1_a_at CA684566 - - 7e-1 At4g34190 SEP1 (STRESS ENHANCED PROTEIN 1) C.G. S.X.
0.44 1e-38 159 Vitis vinifera 1617570_at CB979550 hypothetical protein LOC100256116 - 2e-11 At2g26830 emb1187 (embryo defective 1187) C.G. S.X.
0.03 1e-2 40 Zea mays Zm.14917.1.A1_at BM378490 - - 9e-1 At1g04330 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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