Gene omics information

Query gene ID PtpAffx.49713.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.49713.1.A1_atCV273728--6e-2At3g06230ATMKK8S.X.H.G.
0.9199.2PtpAffx.221049.1.S1_atpmrna37606hypothetical protein-6e-1At1g52440-S.X.H.G.
0.7794.9PtpAffx.42039.1.A1_atDN487942--5e+0At4g02360unknown proteinS.X.H.G.
0.5078.6PtpAffx.203723.1.S1_x_atpmrna7361hypothetical protein-2e+0At4g30380EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)S.X.H.G.
0.3661.6PtpAffx.219260.1.S1_atpmrna35126hypothetical protein-7e+0At5g44310late embryogenesis abundant domain-containing protein / LEA domain-containing proteinS.X.H.G.
0.3153.7PtpAffx.22794.1.S1_atDN487129--2e+0At1g67540unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.2100.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
21.299.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.398.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.095.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.794.7GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.694.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.393.7GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.289.3GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.178.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.872.0GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034PtpAffx.7171.1.A1_a_atDN490568hypothetical protein-2e-3At1g49405integral membrane protein, putativeC.G.S.X.
0.021e+034PtpAffx.7171.1.A1_atDN490568hypothetical protein-2e-3At1g49405integral membrane protein, putativeC.G.S.X.
0.031e+034PtpAffx.37085.1.A1_atCV266230hypothetical protein-1e+0At3g18715IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)C.G.S.X.
0.031e+034PtpAffx.208195.1.S1_atpmrna16302hypothetical protein-1e-1At4g20100PQ-loop repeat family protein / transmembrane family proteinC.G.S.X.
0.035e+032PtpAffx.93055.1.S1_atDN500649hypothetical protein-2e-55At5g13650elongation factor family proteinC.G.S.X.
0.025e+032PtpAffx.9122.2.A1_atCV238242hypothetical protein-4e-39At4g33250EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)C.G.S.X.
0.025e+032PtpAffx.85220.1.S1_atDN488269hypothetical protein-7e+0Atmg00120-C.G.S.X.
0.025e+032PtpAffx.42410.1.S1_s_atBP922740hypothetical protein-1e-20At1g64140-C.G.S.X.
0.025e+032PtpAffx.42410.1.S1_atBP922740hypothetical protein-1e-20At1g64140-C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-238Arabidopsis thalianaAt3g06230819797ATMKK8member of MAP Kinase Kinase---C.G.S.X.
0.041e+034Glycine maxGmaAffx.8471.1.S1_s_atBF423913--2e+0At5g52480-C.G.S.X.
0.042e+032Hordeum vulgareEBpi05_SQ002_I18_s_atEBpi05_SQ002_I18--2e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.033e-240Oryza sativaOs.56961.1.S1_at---0C.G.S.X.
0.041e+034Triticum aestivumTaAffx.77528.1.S1_atCA746474--8e-1At4g31580SRZ-22C.G.S.X.
0.035e+030Vitis vinifera1616724_atCF513188--1e+0At5g47060senescence-associated protein-relatedC.G.S.X.
0.037e+030Zea maysZmAffx.1346.1.S1_at40794996-153--5e-21Atmg00160-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage