Gene omics information

Query gene ID	PtpAffx.49713.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.49713.1.A1_at	CV273728	-	-	6e-2	At3g06230	ATMKK8	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.221049.1.S1_at	pmrna37606	hypothetical protein	-	6e-1	At1g52440	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.42039.1.A1_at	DN487942	-	-	5e+0	At4g02360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.203723.1.S1_x_at	pmrna7361	hypothetical protein	-	2e+0	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.219260.1.S1_at	pmrna35126	hypothetical protein	-	7e+0	At5g44310	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.22794.1.S1_at	DN487129	-	-	2e+0	At1g67540	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.2	100.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
21.2	99.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.3	98.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.1	78.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.8	72.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	PtpAffx.7171.1.A1_a_at	DN490568	hypothetical protein	-	2e-3	At1g49405	integral membrane protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.7171.1.A1_at	DN490568	hypothetical protein	-	2e-3	At1g49405	integral membrane protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.37085.1.A1_at	CV266230	hypothetical protein	-	1e+0	At3g18715	IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.208195.1.S1_at	pmrna16302	hypothetical protein	-	1e-1	At4g20100	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e+0	32	PtpAffx.93055.1.S1_at	DN500649	hypothetical protein	-	2e-55	At5g13650	elongation factor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.9122.2.A1_at	CV238242	hypothetical protein	-	4e-39	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.85220.1.S1_at	DN488269	hypothetical protein	-	7e+0	Atmg00120	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At3g06230	819797	ATMKK8	member of MAP Kinase Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.8471.1.S1_s_at	BF423913	-	-	2e+0	At5g52480	-	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	EBpi05_SQ002_I18_s_at	EBpi05_SQ002_I18	-	-	2e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.03	3e-2	40	Oryza sativa	Os.56961.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.77528.1.S1_at	CA746474	-	-	8e-1	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1616724_at	CF513188	-	-	1e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.1346.1.S1_at	40794996-153	-	-	5e-21	Atmg00160	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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