Gene omics information

Query gene ID	PtpAffx.4971.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.4971.2.S1_a_at	CV252275	hypothetical protein	-	3e-49	At5g08160	ATPK3	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.756.2.S1_a_at	DN496305	hypothetical protein	-	2e-6	At2g16790	shikimate kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.123565.1.S1_at	BU829458	hypothetical protein	-	9e-36	At1g36050	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.4857.2.S1_s_at	CK095641	hypothetical protein	-	2e-9	At5g25360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.5890.2.S1_at	CF232083	hypothetical protein	-	5e-3	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.5648.1.A1_at	CV230085	hypothetical protein	-	1e-7	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	5e-86	319	PtpAffx.95910.1.A1_at	CV228173	-	-	8e-1	At1g43010	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-2	40	Ptp.2331.1.S1_at	CF237163	hypothetical protein	-	2e-6	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.200185.1.S1_s_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.127210.1.A1_at	CV266879	hypothetical protein	-	1e-16	At2g24230	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.5746.4.S1_s_at	CV225347	-	-	9e-10	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.37055.2.A1_at	CV263540	hypothetical protein	-	9e-2	At5g08160	ATPK3	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.201950.1.S1_x_at	pmrna3889	hypothetical protein	-	1e-13	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.201950.1.S1_at	pmrna3889	hypothetical protein	-	1e-13	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	3e-49	196	Arabidopsis thaliana	At5g08160	830712	ATPK3	Encodes a serine/threonine protein kinase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	7e-42	173	Glycine max	GmaAffx.78222.2.S1_at	BU083517	-	-	5e-28	At5g08160	ATPK3	C.G.	S.X.	Please select
0.23	8e-30	131	Hordeum vulgare	Contig11060_at	Contig11060	-	-	4e-30	At5g08160	ATPK3	C.G.	S.X.	Please select
0.20	1e-10	69	Oryza sativa	Os09g0237600	AK112084.1	-	Protein kinase domain containing protein	3e-6	At5g08160	ATPK3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	3e-34	147	Triticum aestivum	Ta.7132.1.S1_at	CA686456	-	-	1e-27	At5g08160	ATPK3	C.G.	S.X.	Please select
0.44	8e-66	250	Vitis vinifera	1615384_at	CB981375	hypothetical protein LOC100254141	-	7e-34	At5g08160	ATPK3	C.G.	S.X.	Please select
0.25	3e-35	149	Zea mays	Zm.16324.1.A1_at	CF032268	hypothetical protein LOC100194392	-	5e-17	At5g08160	ATPK3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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