Gene omics information

Query gene ID	PtpAffx.49222.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.49222.1.S1_at	BP930894	hypothetical protein	-	9e-25	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.111678.1.S1_at	CK096757	hypothetical protein	-	3e-8	At2g42770	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.6633.1.S1_at	CV265141	-	-	7e-12	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.144999.1.A1_s_at	CV244449	hypothetical protein	-	4e-1	At2g47840	tic20 protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.206937.1.S1_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.11653.2.S1_a_at	CK095586	hypothetical protein	-	5e-16	At1g15140	oxidoreductase NAD-binding domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8	96.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-9	63	PtpAffx.140896.1.A1_s_at	CV266164	hypothetical protein	-	1e-9	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-4	48	PtpAffx.140896.2.A1_at	CV241110	hypothetical protein	-	5e-4	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-2	40	PtpAffx.213986.1.S1_s_at	pmrna27253	hypothetical protein	-	6e-4	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.207524.1.S1_at	pmrna14936	aminophospholipid ATPase	-	8e-49	At5g04930	ALA1 (aminophospholipid ATPase1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.207524.1.S1_s_at	pmrna14936	aminophospholipid ATPase	-	8e-49	At5g04930	ALA1 (aminophospholipid ATPase1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.70645.1.S1_at	CV280156	cinnamyl alcohol dehydrogenase-like protein /// cinnamyl alcohol dehydrogenase-like protein	-	3e-6	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.70907.1.S1_at	CN520005	hypothetical protein	-	6e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.223235.1.S1_at	pmrna41124	hypothetical protein	-	4e-1	At5g60270	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.214836.1.S1_at	pmrna28727	hypothetical protein	-	7e-1	At4g21760	BGLU47 (Beta-glucosidase 47)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	9e-25	115	Arabidopsis thaliana	At5g16390	831500	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-30	135	Glycine max	Gma.12.1.S1_at	U40666.1	biotin carboxyl carrier protein precursor	-	9e-34	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig21127_at	Contig21127	-	-	6e-3	At3g12060	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	44	Oryza sativa	OsAffx.29031.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Triticum aestivum	TaAffx.37424.2.S1_at	BJ280223	-	-	2e-2	At5g46030	unknown protein	C.G.	S.X.	Please select
0.12	2e-13	75	Vitis vinifera	1622079_at	CD801631	hypothetical protein LOC100266760	-	1e-6	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.7275.1.A1_at	BM336395	hypothetical protein LOC100275154	-	8e-2	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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