CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4868.3.S1_a_at

Gene name f-box family protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.4868.3.S1_a_at CV266607 f-box family protein - 3e-1 At1g55000 peptidoglycan-binding LysM domain-containing protein S.X. H.G.
0.57 84.2 PtpAffx.73309.1.S1_a_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase S.X. H.G.
0.55 82.2 PtpAffx.19734.2.A1_at CV248852 - - 1e+0 At5g26990 drought-responsive family protein S.X. H.G.
0.50 78.6 PtpAffx.135298.1.A1_at CV232578 hypothetical protein - 1e+0 At1g16490 MYB58 (MYB DOMAIN PROTEIN 58) S.X. H.G.
0.29 50.5 PtpAffx.4328.1.S1_a_at CX180970 hypothetical protein - 1e-5 At1g56700 pyrrolidone-carboxylate peptidase family protein S.X. H.G.
0.18 30.8 PtpAffx.127346.1.A1_at CV264384 - - 2e-7 At2g41420 proline-rich family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.8 99.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1 95.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1197 PtpAffx.4868.3.S1_at CV266607 - - 3e-1 At1g55000 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.38 0 741 PtpAffx.4868.1.S1_at CV243275 - - 1e-8 At1g55000 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.29 7e-108 391 PtpAffx.4868.2.S1_at AI167006 f-box family protein - 4e-12 At1g55000 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.02 4e-1 36 PtpAffx.203865.1.S1_at pmrna7633 hypothetical protein - 7e-4 At2g39200 MLO12 (MILDEW RESISTANCE LOCUS O 12) C.G. S.X.
0.02 4e-1 36 PtpAffx.16918.1.S1_at DN497309 hypothetical protein - 4e-8 At1g61560 MLO6 (MILDEW RESISTANCE LOCUS O 6) C.G. S.X.
0.01 2e+0 34 PtpAffx.210794.1.S1_at pmrna21186 hypothetical protein - 3e-100 At5g62310 IRE (INCOMPLETE ROOT HAIR ELONGATION) C.G. S.X.
0.02 2e+0 34 PtpAffx.152709.1.S1_at DN499224 hypothetical protein - 7e+0 At5g65210 TGA1 C.G. S.X.
0.02 2e+0 34 PtpAffx.14501.1.S1_at CK091272 hypothetical protein - 2e-6 At2g28305 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.14002.1.S1_at CV269126 hypothetical protein - 5e-1 At3g05935 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 36 Arabidopsis thaliana At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB - - - C.G. S.X.
0.04 3e-2 40 Glycine max GmaAffx.22471.1.S1_at CD410644 - - 1e-12 At5g63150 unknown protein C.G. S.X.
0.04 6e-1 34 Hordeum vulgare HVSMEh0082A13r2_s_at HVSMEh0082A13r2 - - 3e+0 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) C.G. S.X.
0.03 6e-1 36 Oryza sativa OsAffx.13328.1.S1_at - - - 0 C.G. S.X.
0.03 8e-2 38 Triticum aestivum TaAffx.30543.1.S1_at CA624274 - - 1e-3 At1g15930 40S ribosomal protein S12 (RPS12A) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1607610_at CD801680 hypothetical protein LOC100241095 - 2e-6 At4g23130 CRK5 (CYSTEINE-RICH RLK5) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.701.1.A1_at AI737983 hypothetical protein LOC100274433 - 2e-1 At1g03170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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