Gene omics information

Query gene ID	PtpAffx.48233.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	67.0	PtpAffx.48233.1.A1_at	CV265875	hypothetical protein	-	2e-9	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.7283.1.S1_s_at	BU894467	hypothetical protein	-	2e-31	At3g19340	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.12239.1.A1_at	CV258360	-	-	2e+0	At4g22740	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.4598.1.S1_s_at	CV282946	hypothetical protein	-	3e-36	At5g59140	SKP1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.2627.1.A1_s_at	CX177881	-	-	4e-1	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.22299.1.S1_at	CN549751	f-box family protein	-	6e-53	At3g54480	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	93.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-13	75	Ptp.1545.1.S1_at	CX660078	-	-	3e-1	At1g12140	FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-12	73	PtpAffx.145748.1.S1_at	CK104072	hypothetical protein	-	2e-3	At1g62620	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	1e-7	57	PtpAffx.203171.1.S1_at	pmrna6285	hypothetical protein	-	5e-9	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	3e-5	50	PtpAffx.215666.1.S1_at	pmrna29994	hypothetical protein	-	2e-4	At1g62570	FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.35650.1.A1_at	BP929733	hypothetical protein	-	6e-3	At4g28100	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.86629.1.S1_at	DN496610	hypothetical protein	-	5e-18	At1g16540	ABA3 (ABA DEFICIENT 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e+0	34	PtpAffx.39603.1.S1_at	CV245547	-	-	1e+0	At5g20060	phospholipase/carboxylesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.222723.1.S1_at	pmrna40322	hypothetical protein	-	1e-4	At2g38050	DET2 (DE-ETIOLATED 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.2103.1.A1_s_at	CV246207	hypothetical protein	-	3e-8	At4g35320	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-9	63	Arabidopsis thaliana	At1g62600	842557	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	48	Glycine max	GmaAffx.32380.1.S1_at	BI973117	-	-	8e-1	At5g22150	unknown protein	C.G.	S.X.	Please select
0.10	7e-4	44	Hordeum vulgare	Contig8215_at	Contig8215	-	-	9e-9	At1g63340	FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.32282.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	6e-3	42	Triticum aestivum	Ta.19832.1.A1_at	CA657311	-	-	9e-11	At1g63340	FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase	C.G.	S.X.	Please select
0.13	5e-4	44	Vitis vinifera	1607461_at	CD801250	hypothetical protein LOC100242032	-	2e-1	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.17905.1.A1_at	AY104787.1	-	-	2e-6	At1g12160	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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