CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.48049.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.48049.1.S1_at DN489796 hypothetical protein - 5e+0 At5g24410 glucosamine/galactosamine-6-phosphate isomerase-related S.X. H.G.
0.60 86.0 Ptp.3621.1.S1_at DN492641 - - 7e-2 At3g60328 unknown protein S.X. H.G.
0.59 84.9 Ptp.2232.1.S1_at CK089340 - - 5e+0 At4g11040 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.57 84.2 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) S.X. H.G.
0.21 36.5 PtpAffx.13675.1.A1_at CK096286 - - 4e+0 At3g04090 SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A) S.X. H.G.
0.21 36.5 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.4 99.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.2 98.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 38 PtpAffx.209932.1.S1_at pmrna19582 hypothetical protein - 1e+0 At1g68185 ubiquitin-related C.G. S.X.
0.05 1e-1 36 PtpAffx.211619.1.S1_at pmrna22769 hypothetical protein - 2e-2 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) C.G. S.X.
0.03 1e-1 36 Ptp.3987.1.S1_at DN488978 hypothetical protein - 1e-4 At4g14730 transmembrane protein-related C.G. S.X.
0.04 2e+0 32 PtpAffx.76330.1.A1_at CV235207 hypothetical protein - 2e-8 At2g20920 unknown protein C.G. S.X.
0.03 2e+0 32 PtpAffx.743.1.A1_at CV279007 hypothetical protein - 4e-11 At2g20920 unknown protein C.G. S.X.
0.01 2e+0 32 PtpAffx.224552.1.S1_at pmrna43190 hypothetical protein - 1e-3 At1g56720 protein kinase family protein C.G. S.X.
0.02 2e+0 32 PtpAffx.213320.1.S1_at pmrna26055 hypothetical protein - 2e-1 At4g15350 CYP705A2 C.G. S.X.
0.02 2e+0 32 PtpAffx.209455.1.S1_at pmrna18732 hypothetical protein - 2e-128 At5g23430 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 2e+0 32 PtpAffx.207889.1.S1_at pmrna15664 hypothetical protein - 2e-7 At1g26610 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 30 Arabidopsis thaliana At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP - - - C.G. S.X.
0.07 1e-1 36 Glycine max GmaAffx.65899.1.A1_at CD408146 - - 1e-2 At4g24250 MLO13 (MILDEW RESISTANCE LOCUS O 13) C.G. S.X.
0.06 1e+1 28 Hordeum vulgare HV_CEa0003B14r2_at HV_CEa0003B14r2 - - 8e-1 At4g24026 unknown protein C.G. S.X.
0.03 3e+0 32 Oryza sativa Os02g0136400 CB638965 - Conserved hypothetical protein 2e+0 At5g44560 VPS2.2 C.G. S.X.
0.07 3e-1 34 Triticum aestivum TaAffx.30450.1.S1_at CA625194 - - 2e-9 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1617372_x_at CF201816.1 - - 1e-5 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.04 9e+0 28 Zea mays Zm.2374.1.A1_at AI734567 hypothetical protein LOC100192983 - 3e+0 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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