CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.47668.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.47668.1.A1_at CV254098 hypothetical protein - 2e-9 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative S.X. H.G.
0.40 67.0 PtpAffx.203696.1.S1_at pmrna7321 - - 2e-19 At4g21760 BGLU47 (Beta-glucosidase 47) S.X. H.G.
0.36 61.6 PtpAffx.219994.1.S1_at pmrna36219 hypothetical protein - 6e-2 At1g09932 phosphoglycerate/bisphosphoglycerate mutase-related S.X. H.G.
0.25 43.6 PtpAffx.210127.1.S1_at pmrna19956 hypothetical protein - 7e-21 At3g15850 FAD5 (FATTY ACID DESATURASE 5) S.X. H.G.
0.23 40.5 PtpAffx.100056.1.A1_at BP932830 - - 1e+0 At5g63085 - S.X. H.G.
0.12 19.6 PtpAffx.214717.1.S1_s_at pmrna28543 hypothetical protein - 4e-5 At1g18390 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.8 99.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
20.6 99.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7 96.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-4 48 Ptp.501.1.A1_at CK087671 - - 2e-1 At5g63710 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.219403.1.S1_at pmrna35323 - - 2e-1 At2g33050 AtRLP26 (Receptor Like Protein 26) C.G. S.X.
0.02 2e+0 34 PtpAffx.219403.1.S1_s_at pmrna35323 hypothetical protein - 2e-1 At2g33050 AtRLP26 (Receptor Like Protein 26) C.G. S.X.
0.01 2e+0 34 PtpAffx.215909.1.S1_at pmrna30374 - - 3e-1 At5g49290 protein binding C.G. S.X.
0.01 2e+0 34 PtpAffx.207232.1.S1_at pmrna14340 hypothetical protein - 3e-32 At1g16540 ABA3 (ABA DEFICIENT 3) C.G. S.X.
0.02 2e+0 34 PtpAffx.164020.1.S1_at CK318557 hypothetical protein - 6e-1 At3g13580 60S ribosomal protein L7 (RPL7D) C.G. S.X.
0.02 2e+0 34 Ptp.5930.1.S1_s_at BU816698 hypothetical protein - 6e-4 At1g37130 NIA2 (NITRATE REDUCTASE 2) C.G. S.X.
0.02 2e+0 34 Ptp.3265.1.S1_at DN485794 - - 4e-4 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) C.G. S.X.
0.02 2e+0 34 Ptp.10.1.A1_at CK087557 hypothetical protein - 4e-1 At1g37130 NIA2 (NITRATE REDUCTASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-9 63 Arabidopsis thaliana At3g16150 820860 L-asparaginase, putative / L-asparagine amidohydrolase, putative F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA - - - C.G. S.X.
0.17 6e-7 56 Glycine max Gma.1179.1.S1_at AY096000.1 L-asparaginase - 5e-39 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HY03E10u_s_at HY03E10u - - 1e+1 At5g63060 transporter C.G. S.X.
0.03 3e+0 34 Oryza sativa Os02g0747300 9630.m05036 - - 1e+0 At1g15760 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.3504.1.A1_at CK163751 - - 1e+0 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative C.G. S.X.
0.33 5e-50 196 Vitis vinifera 1614789_at BQ799243 hypothetical protein LOC100248834 - 7e-9 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative C.G. S.X.
0.03 1e+1 30 Zea mays Zm.7969.2.S1_x_at AI714862 - - 1e+1 At4g23895 pleckstrin homology (PH) domain-containing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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