CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.47069.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.47069.1.A1_at CV238066 hypothetical protein - 2e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.50 78.6 PtpAffx.37705.1.S1_at CV241732 - - 4e-1 At1g36745 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.109483.1.A1_s_at CV269063 hypothetical protein - 4e+0 At5g28610 - S.X. H.G.
0.36 61.6 PtpAffx.213724.1.S1_at pmrna26781 hypothetical protein - 2e+0 At4g33355 lipid binding S.X. H.G.
0.29 50.5 PtpAffx.225012.1.S1_at pmrna44004 hypothetical protein - 2e-5 At2g29710 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
0.16 26.9 PtpAffx.2286.3.S1_a_at CV241494 hypothetical protein - 2e+0 At2g26550 HO2 (HEME OXYGENASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.5 99.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
13.6 99.4 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
12.3 99.3 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 1e-91 337 PtpAffx.222696.1.S1_at pmrna40265 hypothetical protein - 4e+0 At5g61640 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) C.G. S.X.
0.23 2e-31 137 Ptp.2463.1.S1_a_at CV257616 hypothetical protein - 3e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.23 2e-31 137 Ptp.2463.1.S1_s_at CV257616 hypothetical protein - 3e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.22 9e-22 105 Ptp.2463.2.S1_at DN484793 hypothetical protein - 4e-1 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.26 5e-17 89 PtpAffx.222694.1.S1_at pmrna40263 - - 1e+1 At5g60890 MYB34 (MYB DOMAIN PROTEIN 34) C.G. S.X.
0.04 8e-13 75 Ptp.7548.1.S1_at CV247993 hypothetical protein - 5e-66 At3g16080 60S ribosomal protein L37 (RPL37C) C.G. S.X.
0.02 1e-2 42 PtpAffx.213020.1.S1_at pmrna25458 hypothetical protein - 1e-5 At3g05620 pectinesterase family protein C.G. S.X.
0.04 4e-2 40 Ptp.2463.3.S1_at CK092991 - - 2e+1 At5g29000 myb family transcription factor C.G. S.X.
0.02 3e+0 34 PtpAffx.94527.1.S1_at CV734636 hypothetical protein - 7e-5 At2g46780 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-6 54 Arabidopsis thaliana At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. - - - C.G. S.X.
0.27 2e-7 57 Glycine max GmaAffx.92499.1.S1_s_at CF809203 Win gene encoding wound-induced protein - 2e-15 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig20932_at Contig20932 - - 5e+0 At4g18620 - C.G. S.X.
0.12 2e-1 38 Oryza sativa Os11g0592200 AY050642.1 - Barwin domain containing protein 8e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.06 3e-2 40 Triticum aestivum TaAffx.116570.1.S1_x_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.11 4e-8 57 Vitis vinifera 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.05 2e-1 36 Zea mays Zm.2227.1.A1_at BM381059 hypothetical protein LOC100191593 - 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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