Gene omics information

Query gene ID PtpAffx.46728.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.46728.1.S1_atCV279430hypothetical protein-7e-100At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeS.X.H.G.
0.5784.2PtpAffx.156415.1.S1_atBU886264hypothetical protein-2e-9At1g44750ATPUP11S.X.H.G.
0.4268.6PtpAffx.89229.1.S1_atCV232583hypothetical protein-1e+0At1g17285unknown proteinS.X.H.G.
0.2850.5PtpAffx.206503.1.S1_atpmrna12900hypothetical protein-3e-31At2g24300calmodulin-binding proteinS.X.H.G.
0.2238.3PtpAffx.48962.1.S1_atCV249671hypothetical protein-3e-2At1g50900-S.X.H.G.
0.1830.8PtpAffx.204658.1.S1_atpmrna9163hypothetical protein-4e-2At2g15760calmodulin-binding proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.499.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
12.599.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.495.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
3.293.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.512e-122440Ptp.6667.1.S1_s_atCX185361hypothetical protein-9e-108At3g14415(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.322e-73278Ptp.846.1.A1_atCV281299hypothetical protein-3e-86At3g14415(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.331e-52208Ptp.4865.1.A1_x_atBP931399hypothetical protein-4e-60At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.331e-52208Ptp.4865.1.A1_s_atBP931399hypothetical protein-4e-60At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.162e-30135PtpAffx.378.2.S1_atCX173134hypothetical protein-1e-25At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.065e-1273PtpAffx.3181.1.S1_atCV260015hypothetical protein-2e-16At3g14150(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.044e-344PtpAffx.378.3.S1_atBP928598--4e-3At4g18360(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.021e+036PtpAffx.55008.1.A1_atBP932928--1e+0At2g25280-C.G.S.X.
0.021e+036PtpAffx.4796.1.A1_atCV274524--4e-1At1g19120small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.597e-100365Arabidopsis thalianaAt3g14420820665(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity;P:metabolic process;C:in 7 components;OBFMPA---C.G.S.X.
0.499e-174611Glycine maxGma.7309.2.S1_s_atCD408975Peroxisomal glycolate oxidase-4e-148At3g14415(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.252e-55216Hordeum vulgareContig1774_atContig1774--2e-72At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.212e-55218Oryza sativaOs07g0152900AK062433.1--2e-11At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.244e-52206Triticum aestivumTa.28197.1.S1_atBQ620267--2e-60At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.540845Vitis vinifera1622249_atCA817903glycolate oxidase-like-6e-153At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
0.119e-1167Zea maysZm.2298.2.A1_a_atBQ619139hypothetical protein LOC100192687-1e-21At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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