Gene omics information

Query gene ID	PtpAffx.4669.4.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.7797.1.S1_at	BU833046	-	-	7e+0	At4g23882	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.2250.1.S1_at	CK090010	-	-	9e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.893.2.S1_a_at	CK089564	-	-	2e-2	At2g27385	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
16.9	99.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
16.2	99.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.7	98.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.4	98.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.3	98.2	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.1	98.1	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.0	33.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-46	184	Ptp.6031.1.S1_s_at	BP933930	precursor of transferase serine hydroxymethyltransferase 2	-	5e-66	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	2e-28	125	Ptp.7780.1.S1_at	DN499145	precursor of transferase serine hydroxymethyltransferase 7	-	7e-11	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	36	PtpAffx.216114.1.S1_x_at	pmrna30698	hypothetical protein	-	3e-1	At5g66930	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	34	PtpAffx.128624.1.A1_at	CV231389	-	-	3e-42	At3g53090	UPL7	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.95100.1.A1_at	CV259901	-	-	1e-9	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.7997.1.S1_at	BU868664	hypothetical protein	-	2e-10	At2g46830	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.24293.1.S1_at	CV265540	hypothetical protein	-	3e-12	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.214359.1.S1_at	pmrna27928	hypothetical protein	-	3e-1	At1g14470	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.207245.1.S1_at	pmrna14360	-	-	1e-3	At2g17430	MLO7 (MILDEW RESISTANCE LOCUS O 7)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	30	Arabidopsis thaliana	At5g63580	836477	FLS2 (FLAVONOL SYNTHASE 2)	encodes a protein whose sequence is similar to flavonol synthase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Glycine max	Gma.14819.1.A1_at	CD401155	-	-	2e+0	At2g35990	-	C.G.	S.X.	Please select
0.04	3e+0	30	Hordeum vulgare	Contig20674_at	Contig20674	-	-	5e+0	At5g30495	-	C.G.	S.X.	Please select
0.06	3e+0	32	Oryza sativa	Os04g0183400	9632.m00918	-	-	8e-1	At4g28365	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	30	Triticum aestivum	TaAffx.56852.1.S1_at	CA642537	-	-	1e+1	At2g28105	-	C.G.	S.X.	Please select
0.06	4e-1	32	Vitis vinifera	1608073_s_at	CB968951	-	-	3e+0	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	C.G.	S.X.	Please select
0.09	2e+0	30	Zea mays	ZmAffx.541.1.A1_at	AI711872	-	-	4e+0	At3g46720	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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