CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4633.2.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 94.3 PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 S.X. H.G.
0.38 63.7 PtpAffx.209442.1.S1_at pmrna18704 hypothetical protein - 2e-23 At3g52170 DNA binding S.X. H.G.
0.30 52.0 Ptp.2920.1.S1_at CF936621 histone 2 - 4e-17 At1g51060 HTA10 S.X. H.G.
0.28 50.5 PtpAffx.2725.1.A1_at CV239343 hypothetical protein - 4e-175 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) S.X. H.G.
0.26 45.2 PtpAffx.249.331.S1_a_at CN549900 hypothetical protein - 3e-33 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) S.X. H.G.
0.25 43.6 Ptp.5934.1.S1_s_at CV245437 hypothetical protein - 6e-4 At4g08980 F-box family protein (FBW2) S.X. H.G.
0.21 36.5 Ptp.7553.1.S1_s_at CV265691 - - 5e-85 At1g75330 OTC (ORNITHINE CARBAMOYLTRANSFERASE) S.X. H.G.
0.21 36.5 PtpAffx.2472.1.S1_at CV257171 hypothetical protein - 2e-75 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) S.X. H.G.
0.19 32.7 Ptp.2403.1.S1_at CV259541 - - 1e-14 At4g16830 nuclear RNA-binding protein (RGGA) S.X. H.G.
0.18 30.8 PtpAffx.76101.1.A1_at CX182245 hypothetical protein - 3e-1 At5g60440 AGL62 (Agamous-like 62) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 97.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.6 97.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 2e-104 379 PtpAffx.4633.3.S1_at CV225507 - - 2e-57 At1g07820 histone H4 C.G. S.X.
0.44 9e-97 353 Ptp.7816.1.S1_at CA821551 histone H4 /// histone H4 - 2e-64 At1g07820 histone H4 C.G. S.X.
0.50 1e-89 329 Ptp.6669.1.S1_at CX170418 histone H4 - 5e-55 At1g07660 histone H4 C.G. S.X.
0.41 5e-86 317 PtpAffx.4633.1.S1_s_at CV251103 histone H4 /// histone H4 - 2e-21 At2g28740 HIS4 C.G. S.X.
0.35 3e-81 301 Ptp.4468.1.S1_at CV256319 histone H4 - 2e-24 At2g28740 HIS4 C.G. S.X.
0.44 2e-36 153 PtpAffx.104205.1.A1_at CV277856 - - 1e-25 At5g59690 histone H4 C.G. S.X.
0.44 2e-29 129 PtpAffx.116735.1.A1_at CK090636 - - 4e-6 At1g07820 histone H4 C.G. S.X.
0.31 9e-23 107 Ptp.4608.3.S1_at CV261168 histone H4 /// histone H4 - 1e-11 At3g46320 histone H4 C.G. S.X.
0.34 4e-22 105 Ptp.6609.1.S1_at BU884738 histone H4 - 2e-37 At5g59690 histone H4 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 9e-47 186 Arabidopsis thaliana At1g07820 837297 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV - - - C.G. S.X.
0.42 3e-29 129 Glycine max Gma.5909.1.S1_at AW348400 - - 6e-52 At5g59690 histone H4 C.G. S.X.
0.39 5e-16 83 Hordeum vulgare Contig724_at Contig724 - - 3e-13 At5g59690 histone H4 C.G. S.X.
0.40 7e-9 61 Oryza sativa OsAffx.24745.1.S1_at - - - 0 C.G. S.X.
0.36 3e-16 85 Triticum aestivum Ta.10329.38.S1_x_at BJ321665 - - 6e-18 At5g59690 histone H4 C.G. S.X.
0.42 2e-38 157 Vitis vinifera 1613041_at CF373004 hypothetical protein LOC100266695 - 2e-27 At3g46320 histone H4 C.G. S.X.
0.30 6e-15 79 Zea mays Zm.15826.1.A1_at CF602424 Histone H4 - 2e-31 At5g59690 histone H4 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage