Gene omics information

Query gene ID	PtpAffx.46298.1.S1_at
Gene name	outward rectifying potassium channel
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.46298.1.S1_at	CV268419	outward rectifying potassium channel	-	2e+0	At4g01840	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.5212.1.A1_at	CV259751	hypothetical protein	-	2e+0	At1g35430	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.208435.1.S1_at	pmrna16759	hypothetical protein	-	1e-5	At1g62290	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.108432.1.A1_at	CV240809	Ca2+ antiporter/cation exchanger	-	4e-3	At5g01490	CAX4 (CATION EXCHANGER 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.210518.1.S1_at	pmrna20626	porin/voltage-dependent anion-selective channel protein	-	4e-1	At1g54290	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.857.2.S1_at	CV257491	hypothetical protein	-	2e-3	At1g15380	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
9.9	98.9	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
9.3	98.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.7	98.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	2e-133	476	PtpAffx.207481.1.S1_at	pmrna14853	outward rectifying potassium channel	-	3e-2	At5g55630	ATKCO1	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	1e-36	155	PtpAffx.2104.1.S1_at	BP933396	outward rectifying potassium channel	-	1e+0	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	7e-32	139	PtpAffx.145508.1.S1_at	CN549687	outward rectifying potassium channel	-	3e-4	At5g55630	ATKCO1	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-2	42	PtpAffx.213121.1.S1_at	pmrna25680	outward rectifying potassium channel	-	2e+0	At4g19240	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.3173.1.S1_a_at	DN483936	hypothetical protein	-	3e-9	At5g41010	NRPB12	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.3173.1.S1_x_at	DN483936	hypothetical protein	-	3e-9	At5g41010	NRPB12	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	Ptp.6347.1.S1_s_at	CV260108	hypothetical protein	-	2e+0	At5g41774	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.9718.1.S1_at	BU886551	hypothetical protein	-	2e+0	At2g19980	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.47122.1.S1_a_at	CV280872	hypothetical protein	-	9e-3	At5g41350	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g01840	828091	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)	Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-5	52	Glycine max	GmaAffx.7865.1.S1_at	BE347358	-	-	9e-1	At3g47295	unknown protein	C.G.	S.X.	Please select
0.05	7e-5	48	Hordeum vulgare	Contig9724_at	Contig9724	voltage-dependent outwardly rectifying plasma membrane K+ channel KCO1/TPK1	-	3e-3	At5g55630	ATKCO1	C.G.	S.X.	Please select
0.07	1e-3	46	Oryza sativa	Os03g0752300	AK069303.1	-	K+ channel protein	9e-1	At1g52200	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-3	42	Triticum aestivum	Ta.21379.1.S1_at	CA674527	-	-	1e+0	At1g77655	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	38	Vitis vinifera	1620830_at	CD797295	hypothetical protein LOC100247627	-	1e+1	At5g39330	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.438.1.A1_at	AI676957	hypothetical protein LOC100193501	-	3e+0	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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