CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4559.2.A1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.4559.2.A1_x_at CV273877 hypothetical protein - 1e-7 At5g15780 pollen Ole e 1 allergen and extensin family protein S.X. H.G.
0.13 21.6 PtpAffx.4559.1.A2_s_at CV257005 hypothetical protein - 2e-7 At5g15780 pollen Ole e 1 allergen and extensin family protein S.X. H.G.
0.11 18.1 PtpAffx.221784.1.S1_at pmrna38836 hypothetical protein - 3e-1 At1g14900 HMGA (HIGH MOBILITY GROUP A) S.X. H.G.
0.03 5.2 PtpAffx.24990.1.A1_at CV235351 - - 1e-13 At3g48110 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) S.X. H.G.
0.03 5.2 Ptp.4163.1.S1_s_at CV278047 aquaporin, MIP family, TIP subfamily - 2e-10 At2g36830 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) S.X. H.G.
0.01 2.2 PtpAffx.163438.1.S1_at CX174311 hypothetical protein - 2e+0 At4g13040 AP2 domain-containing transcription factor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 0 1080 PtpAffx.4559.1.A2_at CV257005 - - 2e-7 At5g15780 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.59 0 1080 PtpAffx.4559.1.A2_s_at CV257005 hypothetical protein - 2e-7 At5g15780 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.64 0 650 PtpAffx.216905.1.S1_x_at pmrna31968 - - 3e-12 At5g15780 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.64 0 650 PtpAffx.216905.1.S1_at pmrna31968 - - 3e-12 At5g15780 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.211682.1.S1_at pmrna22899 hypothetical protein - 3e+0 At2g38600 acid phosphatase class B family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.222026.1.S1_at pmrna39218 metal tolerance protein - 2e-1 At5g35640 - C.G. S.X.
0.01 2e+0 34 PtpAffx.216003.1.S1_at pmrna30517 hypothetical protein - 2e-23 At3g05510 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.211960.1.S1_at pmrna23482 hypothetical protein - 8e-7 At5g48340 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.204921.1.S1_at pmrna9735 hypothetical protein - 8e-6 At5g17910 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-7 57 Arabidopsis thaliana At5g15780 831434 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA - - - C.G. S.X.
0.06 4e-8 59 Glycine max GmaAffx.30698.1.S1_at BE555205 - - 2e-3 At5g15780 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig10881_at Contig10881 - - 4e+0 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) C.G. S.X.
Os05g0218950 0.03 2e-1 Oryza sativa Os12g0579100 - - - 0 C.G. S.X.
0.03 3e-2 40 Triticum aestivum TaAffx.7500.1.S1_at CA657749 - - 2e-1 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621870_at CF414005 hypothetical protein LOC100245239 - 9e-8 At3g20510 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.17572.2.S1_at CF972387 heat- and acid-stable phosphoprotein - 3e-8 At5g46020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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