Gene omics information

Query gene ID PtpAffx.45276.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8096.0PtpAffx.45276.1.S1_atCK090427hypothetical protein-6e-5At3g26730zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3661.6Ptp.7815.1.A1_atCX185861hypothetical protein-1e-1At2g19360unknown proteinS.X.H.G.
0.3153.7PtpAffx.150481.1.S1_atCK105112hypothetical protein-2e-12At5g43930transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.3052.0PtpAffx.1258.4.S1_s_atCF232778actin 1 /// actin 9-0At5g09810ACT7 (ACTIN 7)S.X.H.G.
0.2950.5PtpAffx.4277.1.S1_a_atCV265521--1e-131At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)S.X.H.G.
0.2441.8Ptp.5444.1.S1_x_atBU869351hypothetical protein-6e-121At5g20010RAN-1S.X.H.G.
0.1525.3PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.995.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
2.590.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.389.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6101350Ptp.530.1.A1_atCK088383hypothetical protein-2e+0At3g54310unknown proteinC.G.S.X.
0.480831PtpAffx.45276.2.S1_atCV241740hypothetical protein-1e+0At5g20740invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.011e+036PtpAffx.96911.1.S1_atDN488145hypothetical protein-1e-4At1g45976SBP1 (s-ribonuclease binding protein 1)C.G.S.X.
0.011e+036PtpAffx.6629.1.S1_atAI166920hypothetical protein-4e-30At3g12570FYDC.G.S.X.
0.011e+036PtpAffx.224723.1.S1_atpmrna43536hypothetical protein-3e-7At4g27300S-locus protein kinase, putativeC.G.S.X.
0.011e+036PtpAffx.216798.1.S1_atpmrna31817arogenate dehydrogenase-7e-40At5g34930arogenate dehydrogenaseC.G.S.X.
0.011e+036PtpAffx.212167.1.S1_atpmrna23858hypothetical protein-4e-124At3g04260PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)C.G.S.X.
0.011e+036PtpAffx.211453.1.S1_atpmrna22441hypothetical protein-8e-15At3g60580zinc finger (C2H2 type) family proteinC.G.S.X.
0.011e+036PtpAffx.208755.1.S1_atpmrna17361hypothetical protein-8e-3At3g22800leucine-rich repeat family protein / extensin family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-550Arabidopsis thalianaAt3g26730822285zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;OMFPBVA---C.G.S.X.
0.235e-28127Glycine maxGma.10878.2.S1_a_atCD418066--2e-7At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.015e-136Hordeum vulgareContig18223_atContig18223--1e+0At2g2771060S acidic ribosomal protein P2 (RPP2B)C.G.S.X.
0.041e-759Oryza sativaOs02g0516600AK068618.1-Zn-finger, RING domain containing protein5e-3At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.044e-963Triticum aestivumTa.7054.1.S1_atBJ320020--6e-4At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.011e+034Vitis vinifera1618291_atCF405641hypothetical protein LOC100255871-4e+0At5g26673-C.G.S.X.
0.026e+032Zea maysZmAffx.1334.1.S1_at11990232-82--7e-113Atcg01010-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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