Gene omics information

Query gene ID PtpAffx.44935.1.A1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8196.1PtpAffx.44935.1.A1_atCV268304hypothetical protein-2e-19At2g06050OPR3 (OPDA-REDUCTASE 3)S.X.H.G.
0.1729.1PtpAffx.209556.1.S1_atpmrna18923--5e+0At5g42990UBC18 (ubiquitin-conjugating enzyme 18)S.X.H.G.
0.1321.6PtpAffx.152090.1.S1_atBP924997--1e+0At1g61415unknown proteinS.X.H.G.
0.1321.6PtpAffx.67810.1.A1_s_atBP933304hypothetical protein-1e-4At3g11180oxidoreductase, 2OG-Fe(II) oxygenase family proteinS.X.H.G.
0.0914.6PtpAffx.4290.1.S1_a_atCV258163chorismate synthase /// chorismate synthase-6e-76At1g48850EMB1144 (embryo defective 1144)S.X.H.G.
0.0812.9PtpAffx.208326.1.S1_atpmrna16556hypothetical protein-2e-10At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)S.X.H.G.
0.0812.9PtpAffx.44935.1.A1_a_atCV268304hypothetical protein-2e-19At2g06050OPR3 (OPDA-REDUCTASE 3)S.X.H.G.
0.0711.6PtpAffx.13160.1.A1_atCV254230--5e-1At4g00880auxin-responsive family proteinS.X.H.G.
0.0711.6Ptp.234.1.A1_atCV243095hypothetical protein-8e-21At3g15680zinc finger (Ran-binding) family proteinS.X.H.G.
0.069.8PtpAffx.42068.1.A1_atDN486905--2e+0At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.299.5GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
14.099.4GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.098.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.797.9GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
5.897.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.896.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.794.7GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.494.0GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.992.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.992.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9801903PtpAffx.44935.1.A1_a_atCV268304hypothetical protein-2e-19At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.510841Ptp.640.1.S1_s_atCX186020hypothetical protein-1e-21At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.445e-150531PtpAffx.44935.3.A1_atDN496114--9e-1At3g13403-C.G.S.X.
0.362e-103377Ptp.640.2.S1_s_atBU894839hypothetical protein-1e-16At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.033e-654PtpAffx.26497.1.S1_atCK105060--3e-52At1g76690OPR2C.G.S.X.
0.048e-446PtpAffx.2548.1.A1_atCV259452--4e-12At1g76690OPR2C.G.S.X.
0.022e-138PtpAffx.216720.1.S1_s_atpmrna31684hypothetical protein-1e-14At1g76690OPR2C.G.S.X.
0.032e-138PtpAffx.208369.1.S1_atpmrna16643hypothetical protein-3e-15At1g76680OPR1C.G.S.X.
0.022e-138PtpAffx.125021.1.S1_atCK103071hypothetical protein-4e-20At2g40270protein kinase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-1997Arabidopsis thalianaAt2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.---C.G.S.X.
0.196e-1479Glycine maxGmaAffx.6142.1.S1_atBU765938--3e-6At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.047e-548Hordeum vulgareContig24340_atContig24340--2e-2At1g76690OPR2C.G.S.X.
0.071e-1275Oryza sativaOs08g0459600AK071203.1-12-oxophytodienoate reductase 3 (EC 1.3.1.42)2e-7At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.086e-446Triticum aestivumTa.8433.2.S1_a_atCA645972--1e-3At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.278e-22103Vitis vinifera1608502_atBQ794120hypothetical protein LOC100262732-1e-3At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.056e-238Zea maysZm.13525.1.A1_atCB27825212-oxo-phytodienoic acid reductase-2e+1At5g02220unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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