Gene omics information

Query gene ID	PtpAffx.4493.1.A1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.4493.1.A1_x_at	CV237113	hypothetical protein	-	6e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.206091.1.S1_at	pmrna12066	hypothetical protein	-	5e-13	At3g10185	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.8983.1.S1_at	BU791127	hypothetical protein	-	3e+0	At1g35333	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.159473.1.A1_at	CV271780	hypothetical protein	-	2e-3	At3g18050	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.5253.1.A1_at	CV255813	-	-	2e+0	At4g32105	galactosyltransferase	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.25004.4.S1_a_at	CV237911	hypothetical protein	-	1e-3	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	98.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.6	98.6	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.5	98.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.9	98.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.3	97.7	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.2	97.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2	96.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1451	PtpAffx.4493.1.A1_a_at	CV237113	hypothetical protein	-	6e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	1e-135	484	PtpAffx.4493.3.S1_s_at	CV237188	hypothetical protein	-	4e-1	At1g36940	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	1e-129	464	PtpAffx.4493.2.A1_at	CV251495	hypothetical protein	-	6e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	6e-73	276	PtpAffx.4493.4.A1_at	CV262264	-	-	8e-1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	3e-22	107	Ptp.2250.1.S1_at	CK090010	-	-	9e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.71555.1.A1_at	CK089998	-	-	1e+1	At5g26622	beta-galactosidase	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.210365.1.S1_x_at	pmrna20372	hypothetical protein	-	1e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.22200.2.S1_at	CV241652	hypothetical protein	-	2e-19	At5g26200	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.208682.1.S1_at	pmrna17220	hypothetical protein	-	8e-1	At2g26720	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-1	36	Arabidopsis thaliana	At2g10940	815558	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:chloroplast thylakoid membrane, apoplast, chloroplast, membrane;MBPOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	5e-24	113	Glycine max	Gma.1494.2.S1_a_at	AW349894	auxin down regulated	-	1e-1	At1g12100	lipid binding	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	HVSMEa0008L11r2_at	HVSMEa0008L11r2	-	-	2e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	Os09g0480500	9637.m02705	-	-	2e-1	At1g74430	MYB95 (myb domain protein 95)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-3	44	Triticum aestivum	Ta.13771.1.S1_at	AL820976	-	-	3e+0	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	C.G.	S.X.	Please select
0.22	3e-28	125	Vitis vinifera	1615201_at	CF415287	hypothetical protein LOC100257854	-	2e-4	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.19048.1.A1_at	AI857148	carbohydrate transporter/ sugar porter	-	1e+0	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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