CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4462.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) S.X. H.G.
0.55 82.2 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative S.X. H.G.
0.36 61.6 PtpAffx.7639.1.A1_at BP935195 hypothetical protein - 3e+0 At3g25130 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) S.X. H.G.
0.29 50.5 PtpAffx.75787.1.A1_s_at CV268367 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 3e-1 At3g07880 Rho GDP-dissociation inhibitor family protein S.X. H.G.
0.29 50.5 PtpAffx.249.47.A1_s_at CV256610 - - 1e-3 At4g11650 ATOSM34 (osmotin 34) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.8 97.4 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 2149 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) C.G. S.X.
0.02 3e-1 38 PtpAffx.204891.1.S1_at pmrna9661 hypothetical protein - 4e-1 At5g41490 F-box family protein C.G. S.X.
0.01 1e+0 36 PtpAffx.203982.1.S1_at pmrna7857 hypothetical protein - 2e-35 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 1e+0 36 PtpAffx.203982.1.S1_s_at pmrna7857 hypothetical protein - 2e-35 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 1e+0 36 PtpAffx.203612.1.S1_at pmrna7157 hypothetical protein - 2e-20 At5g56360 calmodulin-binding protein C.G. S.X.
0.01 1e+0 36 PtpAffx.202562.1.S1_s_at pmrna5134 hypothetical protein - 2e-25 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 1e+0 36 PtpAffx.202562.1.S1_at pmrna5134 hypothetical protein - 2e-25 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 1e+0 36 PtpAffx.200011.1.S1_at pmrna16 hypothetical protein - 2e-23 At5g56360 calmodulin-binding protein C.G. S.X.
0.01 4e+0 34 PtpAffx.5583.1.A1_at CV243133 - - 2e-108 Atcg00340 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-9 63 Arabidopsis thaliana At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase - - - C.G. S.X.
0.07 1e-6 56 Glycine max Gma.7852.1.S1_at CA819291 beta-1,3-glucanase - 6e-1 At3g24710 - C.G. S.X.
0.02 2e+0 34 Hordeum vulgare EBro08_SQ007_H23_at EBro08_SQ007_H23 - - 8e-1 At1g02450 NIMIN1 (NIM1-INTERACTING 1) C.G. S.X.
0.03 4e-4 48 Oryza sativa Os03g0600600 9631.m03880 - Beta-1,3-glucanase precursor 5e+0 At5g20330 BETAG4 C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.108832.1.S1_at CA683547 - - 9e-1 At3g57072 unknown protein C.G. S.X.
0.09 2e-5 50 Vitis vinifera 1615595_at AF239617.2 class I beta-1,3-glucanase - 3e-3 At4g16260 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.03 5e+0 32 Zea mays Zm.6689.1.A1_s_at BM381797 hypothetical protein LOC100272379 - 2e+1 At5g55125 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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