CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.44331.1.A1_a_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.44331.1.A1_a_at CV279604 - - 2e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) S.X. H.G.
0.50 78.6 Ptp.1367.1.A1_s_at CV265700 hypothetical protein - 6e-3 At4g18400 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.152585.1.S1_at DN497748 - - 2e-9 At2g43210 UBX domain-containing protein S.X. H.G.
0.17 29.1 PtpAffx.5801.2.S1_a_at CF230406 hypothetical protein - 4e-22 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) S.X. H.G.
0.15 25.3 PtpAffx.200874.1.S1_s_at pmrna1714 hypothetical protein - 1e-57 At3g52140 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.09 14.6 PtpAffx.70125.1.S1_s_at CV231195 hypothetical protein - 1e-4 At5g08695 nucleic acid binding / nucleotide binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.0 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4 90.4 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 PtpAffx.35265.1.S1_at DN487919 - - 3e-1 At1g16230 syntaxin-related family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.24997.1.S1_at CV238120 hypothetical protein - 4e-7 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 5e-1 36 PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.01 5e-1 36 PtpAffx.202831.1.S1_at pmrna5613 heavy metal ATPase - 9e-42 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.01 5e-1 36 PtpAffx.202831.1.S1_s_at pmrna5613 heavy metal ATPase - 9e-42 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.01 5e-1 36 PtpAffx.201326.1.S1_s_at pmrna2629 hypothetical protein - 4e-27 At3g15030 TCP4 (TCP family transcription factor 4) C.G. S.X.
0.01 5e-1 36 PtpAffx.200592.1.S1_x_at pmrna1170 heavy metal ATPase - 1e-43 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.01 5e-1 36 PtpAffx.200592.1.S1_at pmrna1170 heavy metal ATPase - 1e-43 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.03 5e-1 36 PtpAffx.200210.1.S1_x_at pmrna396 hypothetical protein - 9e-1 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g18690 831987 AGP25 (ARABINOGALACTAN PROTEINS 25) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.18716.1.S1_at CA940464 - - 6e-2 At1g68500 unknown protein C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig12566_at Contig12566 - - 9e-3 At1g08845 structural constituent of ribosome C.G. S.X.
0.03 5e-2 40 Oryza sativa OsAffx.23164.1.S1_x_at - - - 0 C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.79368.1.S1_at CA717241 - - 3e+0 At4g18790 NRAMP5 C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1621782_at CD802296 hypothetical protein LOC100265088 - 1e-15 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.03 7e-1 34 Zea mays ZmAffx.1145.1.S1_at AW400072 hypothetical protein LOC100278076 - 1e-2 At1g67570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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