CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4431.4.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.4431.4.A1_a_at CV256409 hypothetical protein - 2e-34 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) S.X. H.G.
0.33 57.5 PtpAffx.89113.1.A1_at CV238219 hypothetical protein - 7e-24 At1g31910 GHMP kinase family protein S.X. H.G.
0.33 57.5 Ptp.5540.1.S1_at CV244976 hypothetical protein - 1e-7 At1g19130 - S.X. H.G.
0.17 29.1 Ptp.2359.2.S1_a_at BU896246 hypothetical protein - 3e-11 At2g41760 unknown protein S.X. H.G.
0.15 25.3 PtpAffx.128059.1.A1_at CV267330 - - 4e-1 At1g59171 ATP binding / inositol pentakisphosphate 2-kinase S.X. H.G.
0.13 21.6 Ptp.4712.1.S1_at CV257380 hypothetical protein - 1e-14 At5g56760 ATSERAT1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 6e-35 149 PtpAffx.59414.1.A1_s_at CK101710 hypothetical protein - 2e-39 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) C.G. S.X.
0.07 6e-29 129 PtpAffx.221563.1.S1_at pmrna38507 hypothetical protein - 1e-99 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.07 6e-29 129 PtpAffx.204019.1.S1_at pmrna7927 hypothetical protein - 0 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.16 6e-29 129 PtpAffx.139698.1.A1_at CV266596 hypothetical protein - 4e-25 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.06 7e-4 46 PtpAffx.17659.1.A1_at CV277842 hypothetical protein - 1e+0 At2g41380 embryo-abundant protein-related C.G. S.X.
0.05 4e-2 40 PtpAffx.205813.1.S1_x_at pmrna11499 hypothetical protein - 7e+0 At3g18160 peroxin-3 family protein C.G. S.X.
0.05 4e-2 40 PtpAffx.205813.1.S1_at pmrna11499 hypothetical protein - 7e+0 At3g18160 peroxin-3 family protein C.G. S.X.
0.03 4e-2 40 Ptp.2823.1.S1_s_at CV245174 hypothetical protein - 3e-7 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.03 2e-1 38 PtpAffx.157390.1.S1_at CK102692 hypothetical protein - 2e-20 At2g27460 sec23/sec24 transport family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-34 147 Arabidopsis thaliana At1g30330 839913 ARF6 (AUXIN RESPONSE FACTOR 6) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. - - - C.G. S.X.
0.26 6e-26 119 Glycine max Gma.17866.1.S1_at AI442893 - - 4e-44 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) C.G. S.X.
0.09 1e-21 103 Hordeum vulgare Contig12845_at Contig12845 - - 9e-34 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.07 1e-18 95 Oryza sativa Os12g0613700 AK121703.1 - Transcriptional factor B3 family protein 9e-52 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.11 9e-12 71 Triticum aestivum Ta.9398.2.S1_at BQ802572 - - 3e-17 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) C.G. S.X.
0.13 5e-32 137 Vitis vinifera 1612564_at CF207502 - - 2e-32 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
0.10 8e-7 54 Zea mays Zm.8402.1.A1_at BM073969 - - 2e-18 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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