Gene omics information

Query gene ID PtpAffx.43839.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5582.2PtpAffx.43839.1.S1_atDN501305hypothetical protein-3e-23At4g09960STK (SEEDSTICK)S.X.H.G.
0.5078.6PtpAffx.207694.1.S1_atpmrna15268hypothetical protein-5e+0At5g40860unknown proteinS.X.H.G.
0.5078.6PtpAffx.205324.1.S1_atpmrna10548hypothetical protein-1e-1At4g37110protein binding / zinc ion bindingS.X.H.G.
0.4673.7PtpAffx.200958.1.S1_atpmrna1878hypothetical protein-4e-2At1g05065CLE20 (CLAVATA3/ESR-RELATED 20)S.X.H.G.
0.3964.6PtpAffx.5743.1.A1_atCV236133--2e-2At1g36640unknown proteinS.X.H.G.
0.3357.5PtpAffx.34101.1.S1_atDN501612--4e-1At1g25330basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.2950.5PtpAffx.153815.1.A1_atCV241744--2e-1At1g77765unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.3100.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
11.599.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.798.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
4.395.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.293.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.992.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.490.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.088.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.088.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9801538PtpAffx.43839.1.S1_a_atDN501305hypothetical protein-3e-23At4g09960STK (SEEDSTICK)C.G.S.X.
0.630737PtpAffx.43839.2.S1_atCV256507hypothetical protein-2e-15At4g09960STK (SEEDSTICK)C.G.S.X.
0.082e-22107PtpAffx.9092.1.S1_s_atAF185574.2hypothetical protein-2e-56At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.082e-22107PtpAffx.9092.1.S1_atAF185574.2hypothetical protein-2e-56At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.173e-1273PtpAffx.162863.1.S1_atBU882965hypothetical protein-1e-6At3g58780SHP1 (SHATTERPROOF 1)C.G.S.X.
0.063e-1273Ptp.2554.1.A1_atAF377868.1MIKC mads-box transcription factor PTM5-4e-8At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.092e-1067PtpAffx.213045.1.S1_atpmrna25528hypothetical protein-5e-24At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.077e-1065PtpAffx.56981.3.S1_atCV242364MIKC mads-box transcription factor SOC1-4e-23At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.077e-1065PtpAffx.206108.1.S1_atpmrna12111hypothetical protein-9e-5At4g37940AGL21C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.373e-23109Arabidopsis thalianaAt4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovules---C.G.S.X.
0.463e-89329Glycine maxGma.6760.1.S1_atBU544178--1e-42At4g09960STK (SEEDSTICK)C.G.S.X.
0.223e-652Hordeum vulgareContig3831_atContig3831--3e-15At4g18960AG (AGAMOUS)C.G.S.X.
0.204e-1583Oryza sativaOsAffx.23186.1.S1_at---0C.G.S.X.
0.101e-757Triticum aestivumTa.27776.1.S1_atBJ274612MADS-box transcription factor TaAGL2-3e-12At4g18960AG (AGAMOUS)C.G.S.X.
0.542e-89327Vitis vinifera1621836_atAF373604.1MADS-box protein 5-2e-9At4g09960STK (SEEDSTICK)C.G.S.X.
0.199e-1993Zea maysZm.134.1.S1_atU31521.1Zea AGAMOUS homolog2-5e-11At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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