Gene omics information

Query gene ID	PtpAffx.43839.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.207694.1.S1_at	pmrna15268	hypothetical protein	-	5e+0	At5g40860	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.205324.1.S1_at	pmrna10548	hypothetical protein	-	1e-1	At4g37110	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.200958.1.S1_at	pmrna1878	hypothetical protein	-	4e-2	At1g05065	CLE20 (CLAVATA3/ESR-RELATED 20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.5743.1.A1_at	CV236133	-	-	2e-2	At1g36640	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.34101.1.S1_at	DN501612	-	-	4e-1	At1g25330	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.153815.1.A1_at	CV241744	-	-	2e-1	At1g77765	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.3	100.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
11.5	99.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.7	98.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1538	PtpAffx.43839.1.S1_a_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.63	0	737	PtpAffx.43839.2.S1_at	CV256507	hypothetical protein	-	2e-15	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-22	107	PtpAffx.9092.1.S1_s_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-22	107	PtpAffx.9092.1.S1_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	3e-12	73	PtpAffx.162863.1.S1_at	BU882965	hypothetical protein	-	1e-6	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-12	73	Ptp.2554.1.A1_at	AF377868.1	MIKC mads-box transcription factor PTM5	-	4e-8	At2g45660	AGL20 (AGAMOUS-LIKE 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-10	67	PtpAffx.213045.1.S1_at	pmrna25528	hypothetical protein	-	5e-24	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	7e-10	65	PtpAffx.56981.3.S1_at	CV242364	MIKC mads-box transcription factor SOC1	-	4e-23	At4g11880	AGL14 (agamous-like 14)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	7e-10	65	PtpAffx.206108.1.S1_at	pmrna12111	hypothetical protein	-	9e-5	At4g37940	AGL21	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-23	109	Arabidopsis thaliana	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	3e-89	329	Glycine max	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.22	3e-6	52	Hordeum vulgare	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.20	4e-15	83	Oryza sativa	OsAffx.23186.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-7	57	Triticum aestivum	Ta.27776.1.S1_at	BJ274612	MADS-box transcription factor TaAGL2	-	3e-12	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.54	2e-89	327	Vitis vinifera	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.19	9e-19	93	Zea mays	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage