CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.43837.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.8523.2.S1_a_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) S.X. H.G.
0.14 23.5 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein S.X. H.G.
0.10 16.3 PtpAffx.254.1.S1_s_at CV268035 hypothetical protein - 1e-20 At2g47115 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.30944.1.A1_at CV246079 hypothetical protein - 4e-22 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 98.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.7 98.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-8 57 PtpAffx.200563.1.S1_at pmrna1114 hypothetical protein - 7e-2 At5g27420 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 4e-6 52 PtpAffx.220086.1.S1_at pmrna36400 hypothetical protein - 1e-3 At3g29075 glycine-rich protein C.G. S.X.
0.04 4e-6 52 PtpAffx.214065.1.S1_at pmrna27393 hypothetical protein - 2e+0 At2g16430 PAP10 (PURPLE ACID PHOSPHATASE 10) C.G. S.X.
0.03 4e-6 52 PtpAffx.206998.1.S1_at pmrna13866 hypothetical protein - 2e-1 At3g22090 unknown protein C.G. S.X.
0.03 6e-5 48 PtpAffx.12184.1.S1_at CN524707 hypothetical protein - 1e-14 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.03 6e-5 48 PtpAffx.12184.1.S1_a_at CN524707 hypothetical protein - 1e-14 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.04 2e-4 46 PtpAffx.102032.1.A1_s_at CV240532 hypothetical protein - 6e-3 At2g01370 DNA-binding storekeeper protein-related C.G. S.X.
0.06 1e-3 44 PtpAffx.3298.1.S1_at CK110786 - - 3e+0 Atmg00480 - C.G. S.X.
0.04 1e-3 44 PtpAffx.3298.2.S1_at CV261707 - - 3e-1 At1g51950 IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-6 52 Arabidopsis thaliana At4g24026 6240360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.07 4e-6 52 Glycine max GmaAffx.73726.1.S1_at CA782853 - - 2e-11 At5g03560 nucleobase:cation symporter C.G. S.X.
0.05 9e-8 56 Hordeum vulgare Contig3265_s_at Contig3265 - - 3e-2 At2g35910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Os10g0431300 0.07 9e-8 Oryza sativa Os10g0431200 9638.m02528 - - 4e+0 At1g68680 unknown protein C.G. S.X.
0.08 5e-5 48 Triticum aestivum TaAffx.6011.1.S1_at CA693433 - - 1e+1 At5g20820 auxin-responsive protein-related C.G. S.X.
0.06 3e-3 40 Vitis vinifera 1614969_at CA810356 hypothetical protein LOC100252305 - 3e+0 At4g00390 transcription regulator C.G. S.X.
0.08 3e-4 44 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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