Gene omics information

Query gene ID	PtpAffx.43760.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.43760.1.A1_at	CK090842	-	-	9e-2	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.8616.1.A1_at	CV242248	hypothetical protein	-	2e-28	At1g11360	universal stress protein (USP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.5761.1.S1_at	AI161593	hypothetical protein	-	5e-29	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.202105.1.S1_s_at	pmrna4204	hypothetical protein	-	1e-3	At3g60380	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.2081.1.A1_s_at	CV272057	hypothetical protein	-	6e-34	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	98.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.2	98.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.0	98.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	1106	Ptp.5005.1.S1_s_at	CK097826	-	-	2e-17	At5g61530	small G protein family protein / RhoGAP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.205449.1.S1_at	pmrna10776	hypothetical protein	-	6e-2	At5g26673	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.3539.1.S1_a_at	AY438099.1	hypothetical protein	-	1e-6	At3g25810	myrcene/ocimene synthase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.35286.1.S1_at	CN550224	hypothetical protein	-	3e-39	At4g39080	VHA-A3 (VACUOLAR PROTON ATPASE A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.225178.1.S1_at	pmrna44327	hypothetical protein	-	1e-1	At1g18590	SOT17 (SULFOTRANSFERASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.223149.1.S1_at	pmrna41007	cc-nbs-lrr resistance protein	-	9e-3	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.223149.1.S1_x_at	pmrna41007	cc-nbs-lrr resistance protein	-	9e-3	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.22100.1.S1_at	CV252754	hypothetical protein	-	4e+0	At2g30920	ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.211077.1.S1_at	pmrna21760	hypothetical protein	-	6e-29	At3g04030	myb family transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-2	38	Arabidopsis thaliana	At2g32080	817768	PUR ALPHA-1	similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-12	73	Glycine max	Gma.6212.1.S1_at	AW350487	-	-	4e-5	At5g61530	small G protein family protein / RhoGAP family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	HV_CEb0008N01r2_at	HV_CEb0008N01r2	-	-	3e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.04	1e+1	32	Oryza sativa	Os02g0269500	9630.m01580	-	-	2e+0	At2g27020	PAG1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.91458.1.S1_at	BJ317403	-	-	1e+0	At5g09500	40S ribosomal protein S15 (RPS15C)	C.G.	S.X.	Please select
0.04	3e-2	38	Vitis vinifera	1618650_a_at	CF210998	hypothetical protein LOC100250708	-	1e+0	Atmg00450	-	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.11781.1.A1_at	BM380704	-	-	1e+0	At4g40090	AGP3 (arabinogalactan-protein 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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