Gene omics information

Query gene ID	PtpAffx.43592.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	88.4	PtpAffx.43592.1.S1_at	CV243155	-	-	1e-85	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.1954.1.S1_at	CV274512	hypothetical protein	-	5e-113	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.7845.1.A1_s_at	BP932679	mitochondrial phosphate carrier protein	-	3e-23	At3g48850	mitochondrial phosphate transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.249.105.A1_at	CV283073	hypothetical protein	-	0	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.8070.1.A1_at	DN492932	hypothetical protein	-	2e-15	At4g24330	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.2106.1.A1_s_at	CK089070	mitochondrial phosphate carrier protein	-	8e-28	At5g14040	mitochondrial phosphate transporter	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.23367.1.A1_at	CV230093	hypothetical protein	-	8e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.1975.1.S1_at	CV281968	hypothetical protein	-	2e-31	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.2799.1.S1_at	BU874348	hypothetical protein	-	3e-20	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	9e-112	404	Ptp.2037.1.S1_x_at	CV264488	hypothetical protein	-	1e-38	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	4e-111	402	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	3e-90	333	PtpAffx.46654.1.S1_at	BU889616	hypothetical protein	-	3e-95	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	2e-45	184	Ptp.4623.1.S1_at	BI131888	-	-	6e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	3e-28	127	Ptp.2046.1.A1_at	BU836412	-	-	7e-27	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-3	44	PtpAffx.208204.1.S1_at	pmrna16322	hypothetical protein	-	4e-47	At4g14330	phragmoplast-associated kinesin-related protein 2 (PAKRP2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.2363.2.A1_s_at	CV244561	hypothetical protein	-	2e-65	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.206852.1.S1_at	pmrna13612	hypothetical protein	-	3e-136	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.125362.1.S1_at	BU882627	hypothetical protein	-	6e-2	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	1e-85	317	Arabidopsis thaliana	At5g66510	836783	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	9e-72	272	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.21	7e-24	111	Hordeum vulgare	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.27	3e-14	81	Oryza sativa	Os07g0642900	AK060158.1	-	Trimeric LpxA-like domain containing protein	5e-20	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	4e-24	113	Triticum aestivum	Ta.3097.1.S1_at	CD937885	-	-	2e-7	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.45	1e-110	398	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.26	4e-28	125	Zea mays	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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