Gene omics information

Query gene ID	PtpAffx.4328.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.4328.1.S1_a_at	CX180970	hypothetical protein	-	1e-5	At1g56700	pyrrolidone-carboxylate peptidase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.19734.2.A1_at	CV248852	-	-	1e+0	At5g26990	drought-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.73309.1.S1_a_at	CV253817	hypothetical protein	-	3e-11	At2g22425	peptidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.5415.1.S1_a_at	CK099666	hypothetical protein	-	9e-26	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.13492.1.S1_at	BI126959	hypothetical protein	-	2e-6	At1g11170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.77528.2.A1_at	CV244458	hypothetical protein	-	1e-41	At5g06950	AHBP-1B	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.38601.1.A1_at	CK318400	hypothetical protein	-	3e-7	At3g50500	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.5	98.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	0	730	PtpAffx.4328.2.S1_at	BU894843	-	-	4e-2	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	2e-149	529	Ptp.68.3.S1_at	CV262974	-	-	2e-27	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	2e-149	529	Ptp.68.3.S1_s_at	CV262974	hypothetical protein	-	2e-27	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	5e-39	163	PtpAffx.213492.1.S1_at	pmrna26377	hypothetical protein	-	2e+0	At3g11990	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.133356.1.A1_at	CV280606	hypothetical protein	-	6e-44	At4g30610	BRS1 (BRI1 SUPPRESSOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.93557.1.A1_at	BP932995	hypothetical protein	-	4e+0	At5g41860	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.45816.1.S1_s_at	BU893277	hypothetical protein	-	1e-1	At3g22970	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.212503.1.S1_at	pmrna24489	hypothetical protein	-	5e-1	At2g25780	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.211367.1.S1_at	pmrna22281	hypothetical protein	-	3e-2	At2g24800	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-5	52	Arabidopsis thaliana	At1g56700	842126	pyrrolidone-carboxylate peptidase family protein	F:unknown;P:proteolysis;C:cellular_component unknown;BMAOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	5e-39	163	Glycine max	GmaAffx.86283.1.S1_at	BI892496	-	-	7e-4	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.20	5e-12	71	Hordeum vulgare	Contig2574_at	Contig2574	-	-	1e-1	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.20	2e-11	71	Oryza sativa	Os07g0639600	AK067207.1	-	Peptidase C15, pyroglutamyl peptidase I familyprotein	2e-4	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-10	67	Triticum aestivum	Ta.284.1.S1_at	CD891899	-	-	7e-4	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.48	3e-117	420	Vitis vinifera	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.17	8e-17	87	Zea mays	Zm.18076.1.S1_at	CF629599	pyrrolidone carboxyl peptidase	-	3e-9	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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