Gene omics information

Query gene ID	PtpAffx.42700.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.42700.1.A1_at	BP934666	hypothetical protein	-	5e+0	At4g03050	AOP3	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.2463.1.S1_s_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.147241.1.A1_s_at	CV244318	hypothetical protein	-	2e+0	At5g51650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2463.1.S1_a_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.34437.2.S1_at	AJ779507	hypothetical protein	-	1e+0	At1g62421	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.9	98.7	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.3	98.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.2	98.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.5	97.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.3	97.7	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.2	97.6	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.0	96.6	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.8	96.4	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-29	129	PtpAffx.34437.1.S1_at	DN491852	hypothetical protein	-	2e+0	At1g09176	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.32449.2.S1_at	CV266102	hypothetical protein	-	3e-21	At1g21080	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.216133.1.S1_at	pmrna30729	hypothetical protein	-	2e+0	At4g17560	ribosomal protein L19 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213504.1.S1_at	pmrna26400	hypothetical protein	-	1e-22	At4g30080	ARF16 (AUXIN RESPONSE FACTOR 16)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213504.1.S1_s_at	pmrna26400	hypothetical protein	-	1e-22	At4g30080	ARF16 (AUXIN RESPONSE FACTOR 16)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.163275.1.A1_at	CV239659	hypothetical protein	-	1e-21	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.43853.2.A1_s_at	CV242971	iaa-amino acid hydrolase 1	-	3e-8	At3g02875	ILR1 (IAA-LEUCINE RESISTANT 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.32717.1.S1_at	CK104251	-	-	3e-1	At4g21745	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.31214.1.S1_at	BU886884	hypothetical protein	-	4e-5	At2g45720	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	Gma.14011.2.A1_at	CD413458	-	-	8e-7	At1g26090	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	Contig26011_at	Contig26011	-	-	1e+0	At4g04925	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.12641.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-2	38	Triticum aestivum	TaAffx.112607.1.S1_at	CA622572	-	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.827.1.A1_at	AI770520	Growth-regulating factor 8-like	-	3e+0	At3g21610	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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