Gene omics information

Query gene ID	PtpAffx.42410.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	88.4	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.129323.1.S1_s_at	CN522980	hypothetical protein	-	4e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.63988.2.S1_s_at	BU833503	hypothetical protein	-	3e-17	At5g57580	calmodulin-binding protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.139845.1.S1_at	CA926648	-	-	1e-16	At5g58620	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.146086.1.S1_s_at	CX180124	hypothetical protein	-	3e-20	At5g38830	tRNA synthetase class I (C) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6	94.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1865	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.71	0	864	Ptp.6278.1.S1_s_at	DN490865	hypothetical protein	-	2e-34	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.71	0	864	Ptp.6278.1.S1_at	DN490865	hypothetical protein	-	2e-34	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	0	837	Ptp.41.1.A1_at	CK087997	hypothetical protein	-	2e-3	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	6e-60	232	PtpAffx.146379.1.A1_at	CV257315	hypothetical protein	-	4e-1	At1g15040	glutamine amidotransferase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	6e-23	109	PtpAffx.200586.1.S1_s_at	pmrna1161	hypothetical protein	-	5e-46	At5g64550	loricrin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	9e-22	105	Ptp.3553.1.S1_at	DN493158	hypothetical protein	-	8e-37	At5g09670	loricrin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	5e-5	50	PtpAffx.44439.1.S1_a_at	CV232219	hypothetical protein	-	3e-18	At5g09670	loricrin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.28572.2.S1_at	BU815702	hypothetical protein	-	3e-2	At5g08570	pyruvate kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-20	101	Arabidopsis thaliana	At1g64140	842718	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psMC011xD20f_s_at	PsAffx.psMC011xD20f	-	-	3e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.12	6e-5	48	Hordeum vulgare	Contig9167_at	Contig9167	-	-	2e-4	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.16	1e-6	56	Oryza sativa	Os06g0523100	AK062190.1	-	Conserved hypothetical protein	2e-4	At1g64140	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-2	40	Triticum aestivum	Ta.9284.1.S1_x_at	BE430259	-	-	6e-6	At1g64140	-	C.G.	S.X.	Please select
0.10	1e-11	69	Vitis vinifera	1614392_at	CF207745	hypothetical protein LOC100249189	-	2e-26	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.04	2e-4	46	Zea mays	Zm.17100.1.S1_a_at	CF972476	hypothetical protein LOC100217230	-	2e-6	At5g64550	loricrin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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