Gene omics information

Query gene ID	PtpAffx.42238.1.A1_s_at
Gene name	lysine/histidine transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.42238.1.A1_s_at	BP933309	lysine/histidine transporter	-	6e-6	At1g48640	lysine and histidine specific transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.152030.1.S1_at	CA822109	-	-	2e-33	At5g40780	LHT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.152030.1.S1_s_at	CA822109	lysine/histidine transporter	-	2e-33	At5g40780	LHT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.213838.1.S1_at	pmrna27002	hypothetical protein	-	8e-26	At4g13630	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.21874.1.S1_a_at	CV235129	hypothetical protein	-	2e-2	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.33230.1.S1_a_at	CV246411	-	-	2e-96	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.37313.1.A1_at	CV256677	hypothetical protein	-	5e-47	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	98.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.6	97.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6	94.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	1124	PtpAffx.201013.1.S1_at	pmrna1989	lysine/histidine transporter	-	1e-21	At5g40780	LHT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	2e-34	147	PtpAffx.201014.1.S1_at	pmrna1991	lysine/histidine transporter	-	5e-17	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-21	103	PtpAffx.208626.1.S1_at	pmrna17122	lysine/histidine transporter	-	5e-20	At5g40780	LHT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-21	103	PtpAffx.208250.1.S1_at	pmrna16421	lysine/histidine transporter	-	1e-14	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-18	91	PtpAffx.208967.1.S1_s_at	pmrna17773	lysine/histidine transporter	-	1e-11	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.207904.1.S1_at	pmrna15689	hypothetical protein	-	2e-31	At1g69200	kinase	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.140462.1.A1_s_at	CV253313	hypothetical protein	-	1e-10	At5g63270	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.140462.1.A1_at	CV253313	hypothetical protein	-	1e-10	At5g63270	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.1126.3.A1_at	CV244908	hypothetical protein	-	3e-48	At1g08360	60S ribosomal protein L10A (RPL10aA)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	6e-6	52	Arabidopsis thaliana	At1g48640	841286	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	2e-53	210	Glycine max	GmaAffx.42701.1.S1_at	BI317008	-	-	7e-21	At5g40780	LHT1	C.G.	S.X.	Please select
0.06	4e-2	38	Hordeum vulgare	HM10P19r_at	HM10P19r	-	-	1e+0	At4g03298	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	36	Oryza sativa	Os12g0244400	AK070297.1	-	Amino acid/polyamine transporter II family protein	7e-14	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	4e-1	36	Triticum aestivum	Ta.4323.1.A1_at	BJ264015	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.10	3e-8	57	Vitis vinifera	1606724_at	CF215838	hypothetical protein LOC100247480	-	4e-9	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17174.1.A1_at	CO531239	hypothetical protein LOC100273979	-	2e-6	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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