Gene omics information

Query gene ID PtpAffx.42141.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6086.0PtpAffx.42141.1.S1_atCK090701--2e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)S.X.H.G.
0.6791.1Ptp.5642.1.S1_s_atCX654173hypothetical protein-1e-36At3g5258040S ribosomal protein S14 (RPS14C)S.X.H.G.
0.4471.9PtpAffx.3566.2.S1_atDN485687hypothetical protein-5e-16At1g09760U2A' (U2 small nuclear ribonucleoprotein A)S.X.H.G.
0.4471.9Ptp.221.1.S1_s_atCF233014hypothetical protein-2e-6At5g15610proteasome family proteinS.X.H.G.
0.3357.5Ptp.2085.2.S1_s_atCF231740hypothetical protein-2e-30At1g22300GRF10 (GENERAL REGULATORY FACTOR 10)S.X.H.G.
0.3153.7PtpAffx.142.1.S1_s_atCV253962hypothetical protein-2e-3At1g10390nucleoporin family proteinS.X.H.G.
0.3153.7PtpAffx.216715.1.S1_a_atpmrna31674hypothetical protein-3e-1At1g10270GRP23 (GLUTAMINE-RICH PROTEIN23)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
22.699.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
3.193.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.193.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.289.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.088.0GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.155e-2099PtpAffx.24526.1.A1_atCV256778--3e+0At2g28920zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.093e-1583PtpAffx.153759.2.A1_atCV244625--3e-1At5g54980integral membrane family proteinC.G.S.X.
0.063e-1273PtpAffx.63455.1.A1_atCV240348--4e-1At5g27390-C.G.S.X.
0.072e-1067PtpAffx.153759.1.A1_atCV243972--1e+0At5g58770dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeC.G.S.X.
0.102e-757PtpAffx.108227.1.A1_atCV248879--3e-1At1g47720OSB1 (Organellar Single-stranded)C.G.S.X.
0.107e-756PtpAffx.1601.11.A1_atCV226223--5e+0At4g05070unknown proteinC.G.S.X.
0.041e-552PtpAffx.249.526.A1_atCV261389--7e+0At5g61360unknown proteinC.G.S.X.
0.061e-552PtpAffx.249.420.A1_atCV262823--2e+0At2g17560HMGB4 (HIGH MOBILITY GROUP B 4)C.G.S.X.
0.064e-550PtpAffx.781.1.S1_atCV274788--4e-1At3g47510unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e+034Arabidopsis thalianaAt5g62540836374UBC3 (ubiquitin-conjugating enzyme 3)Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.---C.G.S.X.
0.032e-138Glycine maxGmaAffx.90633.1.S1_atCF806358--2e-5At2g34940vacuolar sorting receptor, putativeC.G.S.X.
0.039e-134Hordeum vulgareContig22071_atContig22071--5e+0At3g24450copper-binding family proteinC.G.S.X.
0.039e-136Oryza sativaOs12g01950509640.m00869--4e+0At2g24762AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.115437.1.A1_atBG607902--4e+0At2g43540unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1616416_atCB349840hypothetical protein LOC100251243-7e+0At3g43740leucine-rich repeat family proteinC.G.S.X.
0.038e-134Zea maysZmAffx.262.1.A1_s_atAI670379acidic ribosomal protein P3-3e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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