CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.41755.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) S.X. H.G.
0.60 86.0 Ptp.3621.1.S1_at DN492641 - - 7e-2 At3g60328 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.48049.1.S1_at DN489796 hypothetical protein - 5e+0 At5g24410 glucosamine/galactosamine-6-phosphate isomerase-related S.X. H.G.
0.47 74.6 Ptp.2232.1.S1_at CK089340 - - 5e+0 At4g11040 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.31 53.7 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) S.X. H.G.
0.30 52.0 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.1 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.9 98.7 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.2 98.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 3e-95 349 PtpAffx.81945.1.A1_at CV266854 hypothetical protein - 1e+0 At4g08876 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related C.G. S.X.
0.20 1e-69 264 PtpAffx.200875.1.S1_at pmrna1715 hypothetical protein - 2e-22 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.20 1e-69 264 PtpAffx.200875.1.S1_x_at pmrna1715 hypothetical protein - 2e-22 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.03 1e-1 38 PtpAffx.156135.1.A1_s_at CA927989 hypothetical protein - 2e-17 At2g21410 VHA-A2 (VACUOLAR PROTON ATPASE A2) C.G. S.X.
0.03 6e-1 36 PtpAffx.75380.1.A1_a_at CV245381 hypothetical protein - 9e-1 At2g06570 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.225285.1.S1_at pmrna44526 hypothetical protein - 5e-1 At2g03770 sulfotransferase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.72314.1.S1_a_at DN496286 hypothetical protein - 8e-12 At2g21280 SULA C.G. S.X.
0.02 2e+0 34 PtpAffx.5862.1.A1_at CV231890 chromatin remodeling complex subunit - 1e+0 At2g31380 STH C.G. S.X.
0.02 2e+0 34 PtpAffx.50410.1.A1_at CV245664 - - 1e-1 At5g59110 subtilisin-like serine protease-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Arabidopsis thaliana At5g48030 834854 GFA2 (GAMETOPHYTIC FACTOR 2) encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development. - - - C.G. S.X.
0.08 2e-13 77 Glycine max Gma.12151.1.S1_at BE820895 - - 7e-16 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.04 8e-4 44 Hordeum vulgare Contig8249_at Contig8249 - - 2e-4 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.02 8e-1 36 Oryza sativa Os06g0116800 CB619550 - DnaJ protein-like 5e-5 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.03 2e-3 44 Triticum aestivum Ta.19170.1.S1_at CA648182 - - 6e-1 At3g09590 pathogenesis-related protein, putative C.G. S.X.
0.24 9e-12 69 Vitis vinifera 1622758_at CD714476 hypothetical protein LOC100259686 - 9e-14 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.474.1.A1_at AI677507 U3 small nucleolar RNA-associated protein 11 - 8e+0 Atcg00440 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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