Gene omics information

Query gene ID	PtpAffx.41318.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.41318.1.S1_a_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.158194.1.A1_at	BP934630	hypothetical protein	-	2e+0	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.22672.1.S1_at	DN491862	hypothetical protein	-	4e-42	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.201628.1.S1_at	pmrna3226	hypothetical protein	-	8e-2	At1g06060	RanBPM-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5251.1.S1_s_at	CA924854	hypothetical protein	-	6e-3	At3g04710	ankyrin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.100452.1.S1_at	CK095732	hypothetical protein	-	1e-7	At1g68310	vacuolar sorting signal binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.5550.1.S1_at	CV254630	hypothetical protein	-	1e-42	At4g36960	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.4950.1.S1_at	AJ779286	hypothetical protein	-	2e-54	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.162072.1.S1_s_at	AJ771589	hypothetical protein	-	4e-11	At5g15440	EDL1 (EID1-like 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.424.2.A1_s_at	CV240371	global transcription factor group	-	7e-49	At4g08350	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.4	98.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.1	98.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	2609	PtpAffx.41318.1.S1_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	5e-49	196	PtpAffx.41318.2.S1_at	CV228945	hypothetical protein	-	7e-1	At1g49930	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-3	46	PtpAffx.215015.1.S1_at	pmrna28960	hypothetical protein	-	6e-10	At5g65780	ATBCAT-5	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	5e-3	44	PtpAffx.22188.1.S1_at	CK104459	hypothetical protein	-	1e-1	At1g50110	branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-2	40	PtpAffx.202001.1.S1_at	pmrna3992	hypothetical protein	-	7e-10	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-1	38	PtpAffx.94207.1.S1_at	BU811592	hypothetical protein	-	5e-11	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.77365.1.S1_at	CV245095	hypothetical protein	-	6e-10	At5g21920	YGGT family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.148854.1.S1_at	CK103545	hypothetical protein	-	3e-7	At4g21520	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.140797.1.A1_at	CV244622	-	-	3e-2	At5g39520	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	3e-53	210	Arabidopsis thaliana	At5g65780	836707	ATBCAT-5	encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	8e-79	295	Glycine max	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.27	8e-24	111	Hordeum vulgare	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.28	2e-40	169	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-14	81	Triticum aestivum	TaAffx.129158.2.A1_at	CA736250	-	-	1e+0	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.31	2e-85	315	Vitis vinifera	1622060_at	BM436271	-	-	3e-32	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.25	1e-22	107	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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