CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.40743.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.40743.1.A1_at DN485207 hypothetical protein - 4e-1 At2g14095 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.205555.1.S1_s_at pmrna10986 MIKC mads-box transcription factor /// hypothetical protein - 2e-11 At5g20240 PI (PISTILLATA) S.X. H.G.
0.60 86.0 PtpAffx.225506.1.S1_at pmrna44897 hypothetical protein - 1e-6 At5g03620 subtilase family protein S.X. H.G.
0.55 82.2 PtpAffx.203868.1.S1_at pmrna7641 hypothetical protein - 5e-6 At5g46090 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.207395.1.S1_at pmrna14671 hypothetical protein - 3e-63 At3g51070 dehydration-responsive protein-related S.X. H.G.
0.44 71.9 PtpAffx.50213.1.S1_at AY235222.1 hypothetical protein - 2e-75 At1g24260 SEP3 (SEPALLATA3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.3 100.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
27.0 99.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
24.4 99.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.9 74.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.7 69.4 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.5 63.3 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.5 63.3 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.3 55.0 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 3e-49 196 PtpAffx.201129.1.S1_at pmrna2222 hypothetical protein - 2e+0 At1g33890 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative C.G. S.X.
0.03 6e-1 36 PtpAffx.224105.1.S1_s_at pmrna42343 hypothetical protein - 8e-1 At1g23750 DNA-binding protein-related C.G. S.X.
0.02 6e-1 36 PtpAffx.212427.1.S1_at pmrna24348 hypothetical protein - 2e+0 At5g22190 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.212448.1.S1_at pmrna24386 hypothetical protein - 6e-1 At4g25950 VATG3 (vacuolar ATP synthase G3) C.G. S.X.
0.02 9e+0 32 PtpAffx.96963.1.S1_at CK106118 hypothetical protein - 6e-9 At5g56630 PFK7 (PHOSPHOFRUCTOKINASE 7) C.G. S.X.
0.02 9e+0 32 PtpAffx.92754.1.S1_at CK096310 hypothetical protein - 6e-10 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.01 9e+0 32 PtpAffx.87600.2.S1_at AF008183.1 4-Coumarate:CoA ligase - 3e-4 At1g65060 4CL3 C.G. S.X.
0.02 9e+0 32 PtpAffx.74859.1.S1_at CV251210 - - 5e-1 At4g01670 unknown protein C.G. S.X.
0.01 9e+0 32 PtpAffx.6574.2.S1_at CV237564 hypothetical protein - 3e-9 At1g19570 DHAR1 (dehydroascorbate reductase) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At2g14095 815895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.2975.1.S1_at CD415567 - - 4e-1 At4g14600 - C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig19393_at Contig19393 - - 3e-10 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) C.G. S.X.
0.02 3e+0 34 Oryza sativa Os03g0692700 AK059787.1 - Protein of unknown function DUF538 family protein 7e+0 At4g13870 WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.112812.1.S1_at CA620452 - - 3e+0 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) C.G. S.X.
0.04 3e-2 38 Vitis vinifera 1610215_x_at CF201655.1 - - 7e-1 At1g21326 VQ motif-containing protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.761.1.A1_at AI746033 - - 8e+0 At5g50840 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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