CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.40711.1.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.40711.1.A1_a_at DN496741 hypothetical protein - 3e-4 At1g53040 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.76403.1.A1_at CV232143 hypothetical protein - 3e+0 At4g19035 LCR7 (Low-molecular-weight cysteine-rich 7) S.X. H.G.
0.56 83.9 PtpAffx.154196.1.A1_at CV264050 hypothetical protein - 2e-21 At4g26510 ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase S.X. H.G.
0.46 73.7 PtpAffx.38086.1.A1_s_at CV226853 hypothetical protein - 2e-1 At1g24120 ARL1 (ARG1-LIKE 1) S.X. H.G.
0.44 71.9 PtpAffx.34708.3.S1_s_at CF237092 hypothetical protein - 4e+0 At2g16620 protein kinase-related S.X. H.G.
0.39 64.6 PtpAffx.63208.1.A1_at CV249869 hypothetical protein - 3e-27 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein S.X. H.G.
0.31 53.7 PtpAffx.149830.1.S1_at BU895366 hypothetical protein - 2e-70 At1g08040 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.1 99.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.1 98.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 690 PtpAffx.40711.2.A1_at CV243193 hypothetical protein - 3e-1 At3g46410 protein kinase family protein C.G. S.X.
0.31 8e-141 500 PtpAffx.209969.1.S1_at pmrna19659 hypothetical protein - 5e-54 At1g53040 unknown protein C.G. S.X.
0.31 8e-141 500 PtpAffx.209969.1.S1_s_at pmrna19659 hypothetical protein - 5e-54 At1g53040 unknown protein C.G. S.X.
0.31 3e-100 365 PtpAffx.214821.1.S1_at pmrna28690 hypothetical protein - 5e-54 At1g53040 unknown protein C.G. S.X.
0.02 9e-2 38 PtpAffx.214488.1.S1_at pmrna28175 hypothetical protein - 5e-5 At1g80710 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 3e-1 36 PtpAffx.200108.1.S1_at pmrna193 global transcription factor group - 7e-3 At1g65440 GTB1 C.G. S.X.
0.02 1e+0 34 PtpAffx.9947.2.S1_at CF228881 - - 2e+0 At2g35790 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.25183.1.S1_at CV229703 hypothetical protein - 8e-50 At3g20970 NFU4 C.G. S.X.
0.03 1e+0 34 PtpAffx.224470.1.S1_at pmrna43034 hypothetical protein - 4e-1 At3g18020 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 46 Arabidopsis thaliana At1g53040 841738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBAMF - - - C.G. S.X.
0.15 4e-13 75 Glycine max GmaAffx.54230.1.S1_at BE820328 - - 2e-18 At1g53040 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEb0002B09f_at HVSMEb0002B09f - - 6e-1 At2g11891 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os11g0595400 9639.m03473 - - 3e+0 At5g52730 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.83493.1.S1_x_at CA665309 - - 4e+0 At3g60010 ASK13 (ARABIDOPSIS SKP1-LIKE 13) C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1621147_s_at CF415138 hypothetical protein LOC100247531 - 7e-1 At5g14530 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.6189.3.S1_at AI677605 Translationally controlled tumor protein-like protein - 1e-2 At5g18580 FASS (FASS 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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