CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4070.3.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.4070.3.S1_at CX655364 hypothetical protein - 3e-3 At3g54400 aspartyl protease family protein S.X. H.G.
0.67 91.1 Ptp.7126.1.S1_at DN499762 hypothetical protein - 5e-1 At4g03140 binding / catalytic/ oxidoreductase S.X. H.G.
0.55 82.2 Ptp.6857.1.S1_at BU833205 hypothetical protein - 6e-9 At1g20590 cyclin, putative S.X. H.G.
0.36 61.6 Ptp.5409.1.S1_at BP936883 - - 1e-11 At2g47610 60S ribosomal protein L7A (RPL7aA) S.X. H.G.
0.29 50.5 PtpAffx.9889.1.A1_at BP931052 hypothetical protein - 1e+0 At2g43520 ATTI2 S.X. H.G.
0.20 34.6 Ptp.6104.1.S1_at CF119005 - - 2e-9 At1g80460 NHO1 (nonhost resistance to P. s. phaseolicola 1) S.X. H.G.
0.17 29.1 PtpAffx.7321.1.S1_at CV275702 hypothetical protein - 2e-10 At2g42710 ribosomal protein L1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.5 99.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.1 99.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.5 98.6 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 0 934 PtpAffx.4070.2.S1_at CV275345 hypothetical protein - 7e+0 Atcg00470 - C.G. S.X.
0.48 0 773 PtpAffx.4070.1.A1_s_at CV276019 hypothetical protein - 3e-5 At3g54400 aspartyl protease family protein C.G. S.X.
0.33 2e-70 268 PtpAffx.100104.1.A1_at BP931303 hypothetical protein - 2e-1 At3g22770 F-box family protein-related C.G. S.X.
0.36 4e-65 250 PtpAffx.45194.1.S1_s_at CN521998 hypothetical protein - 3e-1 At1g46336 unknown protein C.G. S.X.
0.01 3e-1 38 PtpAffx.72828.1.S1_s_at CV257087 hypothetical protein - 2e-7 At4g20720 dentin sialophosphoprotein-related C.G. S.X.
0.02 1e+0 36 PtpAffx.5270.1.A1_at DN500945 hypothetical protein - 6e+0 At5g36001 - C.G. S.X.
0.01 1e+0 36 PtpAffx.219834.1.S1_s_at pmrna35982 ZIP transporter - 4e-86 At3g08650 metal transporter family protein C.G. S.X.
0.02 1e+0 36 PtpAffx.211290.1.S1_at pmrna22141 hypothetical protein - 1e+0 At5g67620 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.204737.1.S1_at pmrna9323 hypothetical protein - 2e-14 At2g17150 RWP-RK domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Arabidopsis thaliana At3g54400 824606 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast, cell wall, chloroplast, plant-type cell wall;PMFO - - - C.G. S.X.
0.17 1e-21 105 Glycine max Gma.308.1.S1_at CD414058 - - 6e-5 At3g54400 aspartyl protease family protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig8632_at Contig8632 - - 9e-1 At5g02260 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.31750.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.4355.1.S1_at CA744098 - - 5e+0 At4g02370 unknown protein C.G. S.X.
0.25 2e-14 79 Vitis vinifera 1606471_at CF372161 hypothetical protein LOC100244589 - 3e-6 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.02 1e+0 34 Zea mays Zm.15997.1.S1_at CK368005 hypothetical protein LOC100274725 - 2e-5 At5g47570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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