CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.40315.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 67.0 PtpAffx.40315.1.S1_at BU891653 - - 9e+0 At5g28310 oxidoreductase-related S.X. H.G.
0.47 74.6 PtpAffx.204963.1.S1_at pmrna9815 GRAS family transcription factor - 1e-1 At2g37650 scarecrow-like transcription factor 9 (SCL9) S.X. H.G.
0.46 73.7 PtpAffx.206887.1.S1_at pmrna13672 hypothetical protein - 4e+0 At2g46030 UBC6 (ubiquitin-conjugating enzyme 6) S.X. H.G.
0.20 34.6 PtpAffx.224058.1.S1_at pmrna42293 hypothetical protein - 4e-2 At3g60540 sec61beta family protein S.X. H.G.
0.15 25.3 PtpAffx.95264.1.A1_at CV254658 - - 6e+0 At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.15 25.3 PtpAffx.203463.1.S1_at pmrna6897 autoinhibited H+ ATPase - 1e-44 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.7 99.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
18.5 99.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-7 54 PtpAffx.106093.1.S1_at CA821381 - - 7e-1 At1g76185 unknown protein C.G. S.X.
0.09 3e-6 52 PtpAffx.29038.1.S1_at DN501502 - - 5e-2 At3g60890 ZPR2 (LITTLE ZIPPER 2) C.G. S.X.
0.04 1e-2 40 Ptp.2788.1.S1_at DN488265 - - 1e+0 At1g32760 glutaredoxin family protein C.G. S.X.
0.04 5e-2 38 Ptp.6961.1.S1_at BU866539 - - 2e-6 At1g54410 dehydrin family protein C.G. S.X.
0.04 2e-1 36 PtpAffx.95382.1.A1_s_at CV248763 hypothetical protein - 1e+0 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase C.G. S.X.
0.04 2e-1 36 PtpAffx.95382.1.A1_at CV248763 hypothetical protein - 1e+0 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase C.G. S.X.
0.03 2e-1 36 PtpAffx.80089.1.S1_at DN491332 hypothetical protein - 2e+0 At3g07510 unknown protein C.G. S.X.
0.01 2e-1 36 PtpAffx.210300.1.S1_at pmrna20263 hypothetical protein - 5e-55 At5g24350 - C.G. S.X.
0.04 8e-1 34 PtpAffx.89081.1.A1_at CV239861 - - 1e+0 At3g58450 universal stress protein (USP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e+0 30 Arabidopsis thaliana At5g28310 832915 oxidoreductase-related F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM - - - C.G. S.X.
0.06 8e-1 34 Glycine max Gma.14303.1.S1_at CA852396 - - 2e+0 At5g09990 PROPEP5 (Elicitor peptide 5 precursor) C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HZ64E12r_at HZ64E12r - - 7e+0 At4g05070 unknown protein C.G. S.X.
0.03 4e+0 32 Oryza sativa Os03g0266600 9631.m01553 - - 1e-1 At5g48090 ELP1 (EDM2-LIKE PROTEIN1) C.G. S.X.
0.06 2e+0 32 Triticum aestivum TaAffx.53595.1.S1_at CA690873 - - 8e+0 Atcg01270 - C.G. S.X.
0.07 7e-1 32 Vitis vinifera 1614950_at CB341496 - - 2e+1 At3g14280 unknown protein C.G. S.X.
0.03 1e+1 28 Zea mays Zm.7037.1.A1_at AY111708.1 - - 1e-1 At2g18400 ribosomal protein L6 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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