Gene omics information

Query gene ID PtpAffx.40088.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4268.6PtpAffx.40088.1.A1_atCA927295--6e-58At3g50590nucleotide bindingS.X.H.G.
0.6791.1PtpAffx.202165.1.S1_atpmrna4331hypothetical protein-1e-35At3g60860guanine nucleotide exchange family proteinS.X.H.G.
0.6187.0PtpAffx.159171.1.S1_atCA821479hypothetical protein-2e-158At1g79990protein binding / structural moleculeS.X.H.G.
0.5582.2PtpAffx.217260.1.S1_s_atpmrna32449hypothetical protein-2e-97At2g07360SH3 domain-containing proteinS.X.H.G.
0.5078.6PtpAffx.162976.1.S1_atBU879300hypothetical protein-2e-27At5g37510EMB1467 (embryo defective 1467)S.X.H.G.
0.2747.1PtpAffx.157141.1.S1_s_atCK106059hypothetical protein-5e-31At1g34130STT3B (staurosporin and temperature sensitive 3-like b)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.296.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
4.495.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138PtpAffx.24590.1.S1_atCX169344hypothetical protein-8e-2At5g25570unknown proteinC.G.S.X.
0.032e+034PtpAffx.69882.1.A1_s_atCV239966hypothetical protein-1e-3At2g35540DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.012e+034PtpAffx.224320.1.S1_atpmrna42766pleiotropic drug resistance protein-1e-12At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.022e+034PtpAffx.218610.1.S1_atpmrna34288hypothetical protein-2e-13At1g80880pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.032e+034PtpAffx.217948.1.S1_atpmrna33419pleiotropic drug resistance, ABC transporter family protein-9e-26At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.022e+034PtpAffx.20815.1.S1_atCV241001--3e-3At1g23740oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.022e+034PtpAffx.20815.1.S1_s_atCV241001--3e-3At1g23740oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.022e+034PtpAffx.116699.1.S1_atCK091595hypothetical protein-2e-44At3g11410PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)C.G.S.X.
0.037e+032PtpAffx.719.1.A1_atCV270015hypothetical protein-2e-8At5g42980ATTRX3 (THIOREDOXIN 3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.156e-58224Arabidopsis thalianaAt3g50590824223nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV---C.G.S.X.
0.032e+034Glycine maxPsAffx.psZG006xK06f_atPsAffx.psZG006xK06f--1e+1At5g65060MAF3 (MADS AFFECTING FLOWERING 3)C.G.S.X.
0.034e-238Hordeum vulgareContig26452_atContig26452--5e-3At5g35170adenylate kinase family proteinC.G.S.X.
0.152e-40167Oryza sativaOs09g0408000AK059658.1-Conserved hypothetical protein2e-11At3g50590nucleotide bindingC.G.S.X.
0.121e-1687Triticum aestivumTa.6698.1.S1_atCK200349--2e-9At3g50590nucleotide bindingC.G.S.X.
0.034e-134Vitis vinifera1621965_s_atBQ793756hypothetical protein LOC100247098-8e-36At5g2354026S proteasome regulatory subunit, putativeC.G.S.X.
0.174e-2097Zea maysZm.5951.1.A1_atAI665912--3e-14At3g50590nucleotide bindingC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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