CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.40088.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 68.6 PtpAffx.40088.1.A1_at CA927295 - - 6e-58 At3g50590 nucleotide binding S.X. H.G.
0.67 91.1 PtpAffx.202165.1.S1_at pmrna4331 hypothetical protein - 1e-35 At3g60860 guanine nucleotide exchange family protein S.X. H.G.
0.61 87.0 PtpAffx.159171.1.S1_at CA821479 hypothetical protein - 2e-158 At1g79990 protein binding / structural molecule S.X. H.G.
0.55 82.2 PtpAffx.217260.1.S1_s_at pmrna32449 hypothetical protein - 2e-97 At2g07360 SH3 domain-containing protein S.X. H.G.
0.50 78.6 PtpAffx.162976.1.S1_at BU879300 hypothetical protein - 2e-27 At5g37510 EMB1467 (embryo defective 1467) S.X. H.G.
0.27 47.1 PtpAffx.157141.1.S1_s_at CK106059 hypothetical protein - 5e-31 At1g34130 STT3B (staurosporin and temperature sensitive 3-like b) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 96.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 PtpAffx.24590.1.S1_at CX169344 hypothetical protein - 8e-2 At5g25570 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.69882.1.A1_s_at CV239966 hypothetical protein - 1e-3 At2g35540 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.224320.1.S1_at pmrna42766 pleiotropic drug resistance protein - 1e-12 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.02 2e+0 34 PtpAffx.218610.1.S1_at pmrna34288 hypothetical protein - 2e-13 At1g80880 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 2e+0 34 PtpAffx.217948.1.S1_at pmrna33419 pleiotropic drug resistance, ABC transporter family protein - 9e-26 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.02 2e+0 34 PtpAffx.20815.1.S1_at CV241001 - - 3e-3 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.20815.1.S1_s_at CV241001 - - 3e-3 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.116699.1.S1_at CK091595 hypothetical protein - 2e-44 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.03 7e+0 32 PtpAffx.719.1.A1_at CV270015 hypothetical protein - 2e-8 At5g42980 ATTRX3 (THIOREDOXIN 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-58 224 Arabidopsis thaliana At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psZG006xK06f_at PsAffx.psZG006xK06f - - 1e+1 At5g65060 MAF3 (MADS AFFECTING FLOWERING 3) C.G. S.X.
0.03 4e-2 38 Hordeum vulgare Contig26452_at Contig26452 - - 5e-3 At5g35170 adenylate kinase family protein C.G. S.X.
0.15 2e-40 167 Oryza sativa Os09g0408000 AK059658.1 - Conserved hypothetical protein 2e-11 At3g50590 nucleotide binding C.G. S.X.
0.12 1e-16 87 Triticum aestivum Ta.6698.1.S1_at CK200349 - - 2e-9 At3g50590 nucleotide binding C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1621965_s_at BQ793756 hypothetical protein LOC100247098 - 8e-36 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.17 4e-20 97 Zea mays Zm.5951.1.A1_at AI665912 - - 3e-14 At3g50590 nucleotide binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage