CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.4007.2.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.4007.2.S1_at CV233043 - - 5e-8 At1g78150 unknown protein S.X. H.G.
0.64 88.4 PtpAffx.9757.1.A1_at CK096700 hypothetical protein - 2e+0 At1g60670 - S.X. H.G.
0.33 57.5 PtpAffx.38771.1.A1_a_at CN521063 hypothetical protein - 1e-17 At1g16870 mitochondrial 28S ribosomal protein S29-related S.X. H.G.
0.30 52.0 PtpAffx.9541.1.S1_s_at CV231353 hypothetical protein - 3e+0 At5g66450 phosphatidic acid phosphatase-related / PAP2-related S.X. H.G.
0.29 50.5 PtpAffx.10393.1.S1_a_at CV249300 hypothetical protein - 2e-34 At1g22300 GRF10 (GENERAL REGULATORY FACTOR 10) S.X. H.G.
0.29 50.5 PtpAffx.33010.1.S1_at CK091114 hypothetical protein - 6e-91 At5g07590 WD-40 repeat protein family S.X. H.G.
0.22 38.3 PtpAffx.206705.1.S1_at pmrna13308 hypothetical protein - 2e-6 At1g76480 unknown protein S.X. H.G.
0.21 36.5 Ptp.7718.1.S1_at DN498770 hypothetical protein - 4e-7 At2g34970 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein S.X. H.G.
0.20 34.6 PtpAffx.9284.2.S1_at CV262293 hypothetical protein - 2e-14 At3g06610 DNA-binding enhancer protein-related S.X. H.G.
0.19 32.7 PtpAffx.5985.1.A1_at CV226485 hypothetical protein - 9e-1 At4g30750 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1295 PtpAffx.4007.1.S1_a_at CV236347 hypothetical protein - 1e-5 At1g78150 unknown protein C.G. S.X.
0.72 0 1295 PtpAffx.4007.1.S1_at CV236347 hypothetical protein - 1e-5 At1g78150 unknown protein C.G. S.X.
0.20 4e-9 63 PtpAffx.5435.2.S1_at CX168547 hypothetical protein - 1e-8 At4g39860 unknown protein C.G. S.X.
0.20 4e-9 63 PtpAffx.5435.2.S1_a_at CX168547 hypothetical protein - 1e-8 At4g39860 unknown protein C.G. S.X.
0.10 7e-8 59 PtpAffx.5435.1.S1_at CK095675 hypothetical protein - 2e-4 At4g39860 unknown protein C.G. S.X.
0.02 6e-2 40 PtpAffx.225905.1.S1_x_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
0.02 6e-2 40 PtpAffx.225905.1.S1_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
0.02 6e-2 40 PtpAffx.225039.1.S1_x_at pmrna44077 hypothetical protein - 4e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
0.02 6e-2 40 PtpAffx.225039.1.S1_s_at pmrna44077 hypothetical protein - 4e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-8 59 Arabidopsis thaliana At1g78150 844151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFM - - - C.G. S.X.
0.21 3e-22 107 Glycine max Gma.6142.1.S1_at CA819653 - - 2e-13 At1g78150 unknown protein C.G. S.X.
0.12 9e-5 48 Hordeum vulgare Contig7721_at Contig7721 - - 7e-1 At1g24450 NFD2 (NUCLEAR FUSION DEFECTIVE 2) C.G. S.X.
0.17 4e-13 77 Oryza sativa Os07g0623600 AK063642.1 - Conserved hypothetical protein 2e-1 At1g35780 unknown protein C.G. S.X.
0.04 2e-1 38 Triticum aestivum Ta.6151.1.S1_at CK206409 - - 8e-4 At4g39860 unknown protein C.G. S.X.
0.16 7e-29 127 Vitis vinifera 1611158_at CF515951 hypothetical protein LOC100260886 - 5e-12 At1g35780 unknown protein C.G. S.X.
0.10 3e-10 65 Zea mays Zm.6161.1.A1_at AW091191 hypothetical protein LOC100193997 - 2e-1 At1g78150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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