CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.39908.3.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.39908.3.S1_a_at CX176310 hypothetical protein - 1e-71 At1g10430 PP2A-2 S.X. H.G.
0.63 88.1 PtpAffx.136990.1.S1_at BU885285 - - 1e-19 At1g72880 acid phosphatase survival protein SurE, putative S.X. H.G.
0.60 86.0 PtpAffx.129212.1.S1_at BP929522 hypothetical protein - 1e+0 At5g11412 nucleic acid binding / nucleotide binding S.X. H.G.
0.53 80.5 Ptp.7424.1.S1_at BU861469 hypothetical protein - 7e-52 At1g12840 DET3 (DE-ETIOLATED 3) S.X. H.G.
0.38 63.7 PtpAffx.78955.1.S1_at BU876794 hypothetical protein - 6e-55 At4g24550 clathrin adaptor complexes medium subunit family protein S.X. H.G.
0.33 57.5 PtpAffx.138176.1.S1_s_at BU883966 hypothetical protein - 7e-5 At2g17720 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.27 47.1 PtpAffx.79842.1.S1_at BU884342 hypothetical protein - 6e-9 At3g43700 ATBPM6 (BTB-POZ and MATH domain 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 0 888 PtpAffx.39908.2.S1_at CN521103 hypothetical protein - 3e-139 At1g10430 PP2A-2 C.G. S.X.
0.34 1e-66 254 Ptp.4495.1.S1_s_at CV274498 hypothetical protein - 2e-72 At1g10430 PP2A-2 C.G. S.X.
0.33 4e-63 242 Ptp.4495.3.S1_at BU810858 hypothetical protein - 3e-77 At1g10430 PP2A-2 C.G. S.X.
0.24 2e-21 103 Ptp.7382.1.S1_at CX176453 - - 1e-121 At2g42500 PP2A-4 C.G. S.X.
0.31 8e-6 52 PtpAffx.119547.1.S1_s_at BP928546 hypothetical protein - 1e-89 At2g42500 PP2A-4 C.G. S.X.
0.04 8e-3 42 PtpAffx.5077.2.S1_a_at CV230584 hypothetical protein - 4e-95 At5g55260 PPX2 (PROTEIN PHOSPHATASE X 2) C.G. S.X.
0.13 8e-3 42 PtpAffx.21417.1.S1_at CN520322 hypothetical protein - 3e-135 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) C.G. S.X.
0.03 3e-2 40 PtpAffx.39908.1.S1_a_at CV259962 hypothetical protein - 1e-87 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) C.G. S.X.
0.03 3e-2 40 PtpAffx.39908.1.S1_at CV259962 hypothetical protein - 1e-87 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 1e-71 270 Arabidopsis thaliana At1g10430 837583 PP2A-2 Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. - - - C.G. S.X.
0.51 6e-121 434 Glycine max Gma.10697.1.S1_at BM887410 - - 3e-101 At1g10430 PP2A-2 C.G. S.X.
0.35 5e-48 190 Hordeum vulgare Contig10800_at Contig10800 - - 2e-53 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) C.G. S.X.
0.34 3e-40 167 Oryza sativa Os02g0217600 AK060905.1 - Protein phosphatase 2A 4e-73 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) C.G. S.X.
0.42 2e-21 103 Triticum aestivum Ta.11307.3.S1_a_at CA629582 - - 3e-22 At1g10430 PP2A-2 C.G. S.X.
0.32 4e-106 383 Vitis vinifera 1621935_at CD802055 - - 2e-136 At1g10430 PP2A-2 C.G. S.X.
0.35 6e-41 167 Zea mays Zm.2912.1.A1_at CF244896 hypothetical protein LOC100272765 - 1e-82 At1g10430 PP2A-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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