Gene omics information

Query gene ID	PtpAffx.39736.2.A1_a_at
Gene name	cytochrome P450
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.39736.2.A1_a_at	CV263341	cytochrome P450	-	1e-3	At3g26280	CYP71B4	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.148676.1.S1_at	CK110328	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	1e-4	At3g26300	CYP71B34	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4024.2.A1_at	CV275984	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.6191.1.S1_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.114927.1.A1_at	CV239325	-	-	2e-1	At5g38378	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.25432.1.S1_x_at	CA822387	hypothetical protein	-	7e+0	At4g03505	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.3	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
10.2	99.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
9.3	98.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.9	98.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.3	98.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	9e-135	480	PtpAffx.100112.1.A1_at	BP931069	cytochrome P450	-	8e-2	At4g11393	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	4e-75	282	PtpAffx.39736.3.A1_a_at	CV268892	cytochrome P450	-	3e+0	At4g35900	FD	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	4e-75	282	PtpAffx.39736.3.A1_at	CV268892	cytochrome P450	-	3e+0	At4g35900	FD	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	7e-34	145	PtpAffx.224611.1.S1_at	pmrna43311	cytochrome P450	-	3e-2	At3g26160	CYP71B17	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	7e-34	145	PtpAffx.224611.1.S1_s_at	pmrna43311	cytochrome P450	-	3e-2	At3g26160	CYP71B17	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	6e-31	135	PtpAffx.224612.1.S1_at	pmrna43314	cytochrome P450	-	3e-2	At3g26160	CYP71B17	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-3	42	Ptp.5109.1.S1_at	BU810061	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	6e-2	At3g44250	CYP71B38	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	Ptp.6116.1.S1_at	BU811435	cytochrome P450 /// cytochrome P450	-	2e-3	At4g31500	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.249.283.S1_at	BP935767	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e-5	At4g15350	CYP705A2	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	44	Arabidopsis thaliana	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e+0	34	Glycine max	GmaAffx.72203.1.A1_at	BE823818	-	-	7e-1	At5g24960	CYP71A14	C.G.	S.X.	Please select
0.04	4e-2	38	Hordeum vulgare	rbaal3p07_s_at	rbaal3p07	-	-	6e-1	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.04	3e-6	54	Oryza sativa	Os02g0184700	9630.m00833	-	Cytochrome P450 family protein	1e-2	At5g25180	CYP71B14	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-2	38	Triticum aestivum	TaAffx.38521.1.A1_at	BJ221695	-	-	1e+0	At4g15350	CYP705A2	C.G.	S.X.	Please select
0.04	9e-2	36	Vitis vinifera	1617392_at	CF511392	hypothetical protein LOC100248515	-	2e+0	At1g51355	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.1090.3.A1_a_at	AI714811	-	-	3e+0	At4g12990	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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