Gene omics information

Query gene ID	PtpAffx.39649.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.39649.1.S1_s_at	CK093018	hypothetical protein	-	2e-4	At4g00750	dehydration-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.25097.1.A1_at	CV266763	-	-	6e-44	At2g16570	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.4453.1.S1_a_at	CK094869	hypothetical protein	-	3e-15	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.7739.1.S1_at	DN499114	hypothetical protein	-	2e+0	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.205649.1.S1_at	pmrna11158	hypothetical protein	-	1e-1	At4g03380	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.205649.1.S1_s_at	pmrna11158	hypothetical protein	-	1e-1	At4g03380	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.6334.2.S1_at	CV243562	-	-	1e-16	At5g60680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.47237.3.S1_at	BU810363	hypothetical protein	-	8e-1	At4g13150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.3518.1.S1_at	DN497042	hypothetical protein	-	1e-7	At2g29900	presenilin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.308.4.A1_at	CV269104	hypothetical protein	-	3e-21	At1g50430	DWF5 (DWARF 5)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	97.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-148	525	PtpAffx.202194.1.S1_at	pmrna4388	hypothetical protein	-	3e-13	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-66	252	PtpAffx.211498.1.S1_s_at	pmrna22534	hypothetical protein	-	1e-15	At2g45750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-66	252	PtpAffx.211498.1.S1_at	pmrna22534	hypothetical protein	-	1e-15	At2g45750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	9e-60	230	Ptp.1713.1.A1_at	DN502622	hypothetical protein	-	3e-14	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	8e-17	87	PtpAffx.210755.1.S1_at	pmrna21101	hypothetical protein	-	1e-18	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-9	63	PtpAffx.213065.1.S1_at	pmrna25567	hypothetical protein	-	1e-30	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.201426.1.S1_at	pmrna2818	hypothetical protein	-	3e-53	At4g10440	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.201426.1.S1_s_at	pmrna2818	hypothetical protein	-	3e-53	At4g10440	dehydration-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.140200.1.A1_at	CV267753	-	-	5e-1	At5g49240	APRR4 (PSEUDO-RESPONSE REGULATOR 4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-4	46	Arabidopsis thaliana	At4g00750	825923	dehydration-responsive family protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-5	50	Glycine max	Gma.8016.1.S1_at	BU547223	-	-	8e-18	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	Contig13791_at	Contig13791	-	-	3e-11	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os01g0511600	AK072161.1	-	Hypothetical protein	9e-8	At1g32080	membrane protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e+0	32	Triticum aestivum	Ta.3322.3.S1_a_at	CA649562	-	-	2e-5	At4g18030	dehydration-responsive family protein	C.G.	S.X.	Please select
0.19	2e-14	77	Vitis vinifera	1607184_at	CB981964	hypothetical protein LOC100258938	-	8e-24	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.06	1e-3	42	Zea mays	Zm.14867.1.A1_at	AI621826	-	-	2e-9	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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