CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.39452.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.39452.1.A1_at CV245395 hypothetical protein - 1e-10 At4g17430 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.3698.2.S1_at BU894200 hypothetical protein - 1e-82 At1g77610 glucose-6-phosphate/phosphate translocator-related S.X. H.G.
0.42 68.6 PtpAffx.206961.1.S1_at pmrna13800 hypothetical protein - 5e-59 At1g05960 binding S.X. H.G.
0.36 61.6 PtpAffx.112232.1.S1_at CN549828 hypothetical protein - 9e-61 At4g32140 - S.X. H.G.
0.35 59.7 PtpAffx.249.708.A1_s_at CV258093 hypothetical protein - 1e+1 Atcg00380 - S.X. H.G.
0.32 55.2 PtpAffx.249.318.A1_a_at CV130443 hypothetical protein - 9e-15 At2g35690 ACX5 (ACYL-COA OXIDASE 5) S.X. H.G.
0.24 41.8 PtpAffx.759.1.S1_s_at CN550551 hypothetical protein - 3e-98 At3g62830 AUD1 S.X. H.G.
0.17 29.1 Ptp.580.1.A1_s_at CK088984 hypothetical protein - 5e+0 At5g62998 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.6 99.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
13.8 99.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.5 98.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 PtpAffx.37444.1.S1_s_at CV252115 hypothetical protein - 2e-12 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.03 5e-1 36 Ptp.5666.2.S1_at BU828131 hypothetical protein - 1e-2 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.02 5e-1 36 Ptp.5528.2.A1_at CV274139 - - 6e-28 At3g53890 40S ribosomal protein S21 (RPS21B) C.G. S.X.
0.02 2e+0 34 PtpAffx.70071.2.A1_at CV270231 hypothetical protein - 8e-2 At3g47836 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.5825.1.A1_at CV270995 hypothetical protein - 2e-12 At1g66150 TMK1 (TRANSMEMBRANE KINASE 1) C.G. S.X.
0.02 2e+0 34 PtpAffx.38771.1.A1_a_at CN521063 hypothetical protein - 1e-17 At1g16870 mitochondrial 28S ribosomal protein S29-related C.G. S.X.
0.02 2e+0 34 PtpAffx.224980.1.S1_at pmrna43941 hypothetical protein - 3e-2 At1g66930 serine/threonine protein kinase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.222974.1.S1_at pmrna40720 type-b response regulator /// type-b response regulator - 3e+0 At5g26210 AL4 (ALFIN-LIKE 4) C.G. S.X.
0.01 2e+0 34 PtpAffx.220152.1.S1_at pmrna36505 hypothetical protein - 7e-29 At3g47420 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-10 67 Arabidopsis thaliana At4g17430 827454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PF - - - C.G. S.X.
0.06 9e-6 52 Glycine max GmaAffx.16095.1.S1_at AI959874 - - 1e-3 At4g17430 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig15917_at Contig15917 - - 3e-1 At3g58070 GIS (GLABROUS INFLORESCENCE STEMS) C.G. S.X.
0.03 5e-2 40 Oryza sativa Os10g0561200 AK066634.1 - Conserved hypothetical protein 4e+0 At4g39260 GR-RBP8 C.G. S.X.
0.06 6e+0 32 Triticum aestivum TaAffx.104635.1.S1_at CA746811 - - 5e+0 At5g18650 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612207_at CB973336 hypothetical protein LOC100257783 - 2e-6 At1g48195 zinc finger (CCCH-type) family protein C.G. S.X.
0.06 1e-2 40 Zea mays Zm.7831.1.A1_at BM080062 hypothetical protein LOC100192532 - 1e+0 At3g25540 LAG1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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