Gene omics information

Query gene ID	PtpAffx.38933.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.38933.1.S1_at	BU872946	hypothetical protein	-	5e-4	At1g58440	XF1	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.101087.1.S1_at	CV278966	hypothetical protein	-	5e-13	At4g19170	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.5206.1.S1_x_at	CV233722	hypothetical protein	-	4e-36	At4g26530	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.19419.1.S1_at	CV280607	hypothetical protein	-	2e-16	At5g58260	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	Ptp.6707.1.S1_s_at	DN483945	thioredoxin f	-	3e-11	At5g16400	ATF2	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	Ptp.1238.1.S1_at	CV276962	hypothetical protein	-	8e-75	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	97.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.6	97.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.1	97.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1	97.6	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.7	97.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2	96.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.8	96.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	642	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-49	196	PtpAffx.216262.1.S1_at	pmrna30919	hypothetical protein	-	2e+0	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-49	196	PtpAffx.216262.1.S1_s_at	pmrna30919	hypothetical protein	-	2e+0	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-17	91	PtpAffx.223195.1.S1_at	pmrna41070	hypothetical protein	-	2e+0	At4g16765	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-4	48	PtpAffx.218376.1.S1_x_at	pmrna33970	hypothetical protein	-	1e-2	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-4	48	PtpAffx.218376.1.S1_at	pmrna33970	hypothetical protein	-	1e-2	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-4	48	PtpAffx.212998.1.S1_s_at	pmrna25415	hypothetical protein	-	3e-15	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-3	44	PtpAffx.218999.1.S1_at	pmrna34779	-	-	3e-9	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	3e-3	44	PtpAffx.218378.1.S1_at	pmrna33972	-	-	4e-15	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-4	46	Arabidopsis thaliana	At1g58440	842213	XF1	Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	3e-9	63	Glycine max	Gma.7543.1.A1_at	BI968509	-	-	2e-9	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.04	6e-2	38	Hordeum vulgare	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.07	6e-5	50	Oryza sativa	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-4	48	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.12	2e-10	65	Vitis vinifera	1612781_at	CB978740	hypothetical protein LOC100254037	-	2e-2	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.13	1e-5	50	Zea mays	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage