Gene omics information

Query gene ID	PtpAffx.38755.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	726	Ptp.625.1.S1_at	CK087324	hypothetical protein	-	4e-60	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	700	PtpAffx.38755.2.S1_s_at	CV252052	hypothetical protein	-	2e-56	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.76	0	656	Ptp.625.3.S1_at	CV277321	hypothetical protein	-	1e-25	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.70	1e-66	254	PtpAffx.4827.1.A1_at	CV273066	-	-	5e+0	At3g23570	dienelactone hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	3e-39	163	PtpAffx.181.1.A1_at	DN489690	-	-	7e+0	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	6e-13	75	Ptp.4752.1.S1_at	CV275199	hypothetical protein	-	5e-60	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	3e-8	59	PtpAffx.6862.1.S1_at	DN496244	hypothetical protein	-	7e-24	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.30187.2.S1_at	CX170990	hypothetical protein	-	2e-7	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.222315.1.S1_at	pmrna39641	hypothetical protein	-	7e-40	At1g06720	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	7e-21	101	Arabidopsis thaliana	At3g49870	824149	ATARLA1C (ADP-ribosylation factor-like A1C)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	4e-26	119	Glycine max	GmaAffx.92317.1.S1_at	CF808042	-	-	2e-54	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please select
0.21	4e-27	121	Hordeum vulgare	Contig9224_at	Contig9224	-	-	1e-38	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please select
0.20	6e-29	129	Oryza sativa	Os03g0200800	AK112007.1	-	-	5e-35	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	5e-28	125	Triticum aestivum	Ta.8631.1.S1_at	CA690636	-	-	8e-28	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	C.G.	S.X.	Please select
0.41	8e-89	325	Vitis vinifera	1607646_at	CB977484	hypothetical protein LOC100244584	-	7e-59	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please select
0.21	5e-20	97	Zea mays	Zm.14791.1.A1_at	CF628382	ADP-ribosylation factor-like protein 8B	-	7e-9	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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