Gene omics information

Query gene ID PtpAffx.38213.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.38213.1.A1_atCX172868--1e+0At3g14840leucine-rich repeat family protein / protein kinase family proteinS.X.H.G.
0.4067.0PtpAffx.44492.2.A1_atCV231847hypothetical protein-4e+0At5g52901unknown proteinS.X.H.G.
0.2238.3PtpAffx.73932.1.A1_atDN490898hypothetical protein-4e-1At4g17785MYB39 (myb domain protein 39)S.X.H.G.
0.1016.3PtpAffx.444.1.A1_atCV272950hypothetical protein-8e-12At4g10180DET1 (DE-ETIOLATED 1)S.X.H.G.
0.1016.3PtpAffx.95043.1.A1_atCV262008hypothetical protein-4e+0At3g11090LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)S.X.H.G.
0.0812.9PtpAffx.94833.1.A1_atCV269374hypothetical protein-2e-27At5g46210CUL4 (CULLIN4)S.X.H.G.
0.046.9PtpAffx.37010.1.A1_atCV231839hypothetical protein-4e-16At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.299.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
7.398.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.097.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.697.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.494.0GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.992.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
2.490.4GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.188.6GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.181e-106387PtpAffx.216126.1.S1_s_atpmrna30715hypothetical protein-3e+0At5g23610-C.G.S.X.
0.741e-81303PtpAffx.124550.1.S1_atAI166845--1e+0At3g27230-C.G.S.X.
0.741e-81303PtpAffx.124550.1.S1_s_atAI166845--1e+0At3g27230-C.G.S.X.
0.484e-32139Ptp.2760.1.S1_atDN499362--5e+0At4g26860pyridoxal phosphate bindingC.G.S.X.
0.203e-2099PtpAffx.114324.1.A1_atCV263478--1e+0At3g53060ASK6 (ARABIDOPSIS SKP1-LIKE 6)C.G.S.X.
0.032e+034PtpAffx.3081.1.S1_atDN491909hypothetical protein-1e+0At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)C.G.S.X.
0.022e+034PtpAffx.218279.1.S1_atpmrna33833hypothetical protein-4e-33At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.022e+034PtpAffx.203263.1.S1_atpmrna6462hypothetical protein-1e-1At5g41470-C.G.S.X.
0.012e+034PtpAffx.202071.1.S1_atpmrna4132hypothetical protein-6e-30At5g36210serine-type peptidaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Arabidopsis thalianaAt3g14840820713leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;P---C.G.S.X.
0.067e-342Glycine maxGmaAffx.57476.1.A1_atAW351211--3e+0At1g10310short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.032e+032Hordeum vulgareContig15741_atContig15741--4e-1At5g46300unknown proteinC.G.S.X.
0.039e+032Oryza sativaOs12g05870009640.m03875--2e-1At5g34581hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.035e+032Triticum aestivumTaAffx.28750.1.S1_atCA656655--2e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)C.G.S.X.
0.032e-238Vitis vinifera1613568_atCD719693--1e+0At1g08380PSAO (photosystem I subunit O)C.G.S.X.
0.032e+032Zea maysZm.3105.1.A1_atAY108981.1--1e+0At4g28485unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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