Gene omics information

Query gene ID	PtpAffx.37459.3.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.37459.3.S1_at	CV242690	hypothetical protein	-	8e-2	At2g30590	WRKY21	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.46113.1.S1_at	CF936546	hypothetical protein	-	1e+0	At2g31150	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.3368.1.S1_at	CX656527	hypothetical protein	-	1e-32	At5g52240	MSBP1 (membrane steroid binding protein 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.1631.1.S1_at	CK092403	f-box family protein /// f-box family protein	-	5e-6	At4g07400	VFB3 (VIER F-BOX PROTEINE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.8135.1.A1_at	CV237848	hypothetical protein	-	6e+0	At4g21040	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.22453.1.S1_at	DN491360	hypothetical protein	-	6e-72	At5g14530	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1267	PtpAffx.37459.3.S1_a_at	CV242690	hypothetical protein	-	8e-2	At2g30590	WRKY21	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-51	202	PtpAffx.37459.2.S1_at	CV268877	hypothetical protein	-	4e-18	At2g30590	WRKY21	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	5e-10	65	PtpAffx.138146.1.S1_at	BU896014	hypothetical protein	-	8e-2	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-9	63	PtpAffx.37459.1.S1_at	CK090406	hypothetical protein	-	3e-59	At2g30590	WRKY21	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.586.1.A1_at	CV228919	-	-	1e-3	At4g29210	GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.22236.1.S1_s_at	CV254459	hypothetical protein	-	4e-14	At4g00110	GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.96155.1.S1_at	BP930091	-	-	1e-5	At3g08640	alphavirus core protein family	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.6540.1.S1_at	CX179291	hypothetical protein	-	4e-9	At3g62900	zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.43400.1.A1_at	CV264045	hypothetical protein	-	1e-17	At5g27030	TPR3 (TOPLESS-RELATED 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	38	Arabidopsis thaliana	At2g30590	817609	WRKY21	Encodes WRKY DNA-binding protein 21 (WRKY21).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-8	59	Glycine max	GmaAffx.77950.1.S1_at	BG046482	transcription factor	-	1e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	Contig4572_at	Contig4572	-	-	3e-29	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os03g0581300	9631.m03687	-	-	4e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.83806.1.S1_at	CA650692	-	-	3e+0	At4g37090	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1617855_at	CD799718	-	-	9e-1	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.15219.2.A1_a_at	BM334263	-	-	2e-2	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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